Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00582 ATGGGTTCTTGCAAACACCAAGAACACGATCAACCACAAGAACCCAAATGCCTATGGATCCATGGCCCCATAATTGTCGGCGCTGGCCCATCAGGATTAGCCGCCGCTGCTTCCCTTTCCCACAATCGAATCCCTTCGCTCATTCTCGAGAAATCCGATTGCATCGCTTCCCTTTGGCACTACCGGACCTACGATCGCCTCAAACTTCATCTCCCCAAGCATTTTTGCGAGCTTCCTCTCATGGGTTTCCCTCAAAACTTCCCAAAATACCCTTCCAAAGATCAGTTCATTTCATACATGGAATCCTACGCTTCCCATTTCTCCATTCAACCCCGGTTCAATCAGACCGTTCTCGCCGCTGAATTCGACTCTGTTTCCCGGTTTTGGAGAGTCTCCACTCAAGATACTCAGTACATTTCGCGCTGGCTCATCGTCGCTACCGGTGAAAATGCAGAGCCGGTTATTCCTGAGATTCTGGGGATTGAGCGGTTTACTCGAACCGTGGTTCATACTAGTATGTATAAGTCCGGTTCGGAATTTAAAAACCAGAGGGTTTTGGTCGTTGGTTGTGGGAATTCCGGTATGGAAGTTAGTTTGGATCTCTGCAGACAAAATGCCATCCCCCATATGGTTGTTAGAAACACGGTTCATGTATTACCGCAAGAAATGTTCGGATTCTCGACGTTTGGAATAGCGATGGGGCTTATGAAATGGCTACCTCTAAAATTGGTGGATAAGATTCTTCTTTTAGCTGCCAATTTGACTCTAGGCAATACCAATCAATTGGGTCTCCGACGACCGAAAACCGGTCCGATCGAGCTCAAAAACGCTACGGGAAAGACCCCGGTTCTCGACGTTGGAGCCCTGTCGTATATAAGATCAGGGAAGATCAAGATAATGGAAGGGATTAAGGAGATAACAAGAAATGGAGCGAAGTTCATGGATGGACAAGAGAAGGAGTTTGATTCGATAATCTTAGCAACCGGGTACCGAAGCAATGTGCCAAGTTGGCTCAAGCATGGGTGCGATTTTTTCACGAAAGACGGGATGCCGAAAACCCCATTTCCAAACGGGTGGAAAGGCGAGAAGGGGTTATACACGGTCGGGTTTACTAAGAGAGGGCTGCTCGGAACCTCGTCGGATGCCATGAAAATTGCCGACGACATTGCCGAGCAATGGCGGGCGGGGTGGAATGAGGATGACAAGAATAAATCTTCGTACGTAATATTCGTTAAAGAATTTGAACGAAAATGA 1254 47.53 MGSCKHQEHDQPQEPKCLWIHGPIIVGAGPSGLAAAASLSHNRIPSLILEKSDCIASLWHYRTYDRLKLHLPKHFCELPLMGFPQNFPKYPSKDQFISYMESYASHFSIQPRFNQTVLAAEFDSVSRFWRVSTQDTQYISRWLIVATGENAEPVIPEILGIERFTRTVVHTSMYKSGSEFKNQRVLVVGCGNSGMEVSLDLCRQNAIPHMVVRNTVHVLPQEMFGFSTFGIAMGLMKWLPLKLVDKILLLAANLTLGNTNQLGLRRPKTGPIELKNATGKTPVLDVGALSYIRSGKIKIMEGIKEITRNGAKFMDGQEKEFDSIILATGYRSNVPSWLKHGCDFFTKDGMPKTPFPNGWKGEKGLYTVGFTKRGLLGTSSDAMKIADDIAEQWRAGWNEDDKNKSSYVIFVKEFERK 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3464004 3465534 - Cp4.1LG11g05820.1 Cpe11g00582 477376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00582 417 Pfam Pyridine nucleotide-disulphide oxidoreductase 24 215 - -
Cpe11g00582 417 Gene3D - 23 395 IPR036188 -
Cpe11g00582 417 PRINTS Pyridine nucleotide disulphide reductase class-II signature 22 44 - -
Cpe11g00582 417 PRINTS Pyridine nucleotide disulphide reductase class-II signature 141 149 - -
Cpe11g00582 417 PRINTS Pyridine nucleotide disulphide reductase class-II signature 180 204 - -
Cpe11g00582 417 SUPERFAMILY FAD/NAD(P)-binding domain 181 383 IPR036188 -
Cpe11g00582 417 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 13 411 - -
Cpe11g00582 417 SUPERFAMILY FAD/NAD(P)-binding domain 24 213 IPR036188 -
Cpe11g00582 417 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Cpe11g00582 417 PRINTS FAD-dependent pyridine nucleotide reductase signature 184 202 - -
Cpe11g00582 417 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 13 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00582 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221527 719.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00582 Cpe-Chr11:3464004 Cpe15g00115 Cpe-Chr15:878130 3.22E-174 dispersed
Cpe11g00582 Cpe-Chr11:3464004 Cpe07g00274 Cpe-Chr7:1809924 0 wgd
Cpe11g00582 Cpe-Chr11:3464004 Cpe07g00228 Cpe-Chr7:1480648 3.82E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g423 . . . . Bpe02g01231 . . . Cmo05g00687 Cmo12g00265 . Cma05g00655 . Car12g00294 . . . . . . . . . . . . . . . . . . . . . . . . Cme03g01659 . . . . . . . . . . . . Cma12g00313 . . Cpe11g00582 . . . . . . . . . . . . . . . Lsi08g01158 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007846 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00582 Cpe_Chr11 FPKM 1.513089 1.747302 1.792615 1.47848 3.69909 2.442323 3.2557 0.370604 0.356446 0.333817