Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00595 ATGGCTTTTCTAGAGGTAAAACAGAAACTCCTACGCGAGATTGAAGATCTAGGATTCCCAAGGGCCCGAGTTGTCCGAGCACTTCATAGTACTGGGAATGTCAGCACTGAAGCTGCAATTAATTGGCTCATTGATCATGAGAATGATCCAGATATAGATCAAATGCCCCTGGTAGCAATAGAGATTGATCTTGAATCTCCTGAACCATTTCATATCACAGAGGAAATGAAAAGAAAGGCTAAGGAACTAAGGGATCATGTACGGAAAGAAAAAGAAGAAGAAGAAAAAAAGTTAGAAAGACAGAGGGAGAAGGACAGAATTCGTTCTGGTAAAGAATTACAAGAAGCAAAAAGAACCGCAGAAGAAGCTGAACGGAAACGCTATATAGACTCTAGGCAAGCTGATAAACAGGAGGAGAAGAGAGCAAGGGAAAAAGTTCTACAAAAACTTGAACAAGATAAGATAGAAAGAAGGAGGAATAGTGGAATGCTCTCTGAAAGGTCTGAAAGCCTTGATACAAAATCTAACGCCACCGAAGCAGGGAAAAAGGATGAACTTAGATCGCAGAATTCACTGCCAGCAACTTCAGTTAGTAAAGCAGTTTCTATGAGAGAATGCTTAAGGTCTCTTAGGCGCCATCAAAAGGATGATTCTGATAAAGTGAGAACTGCCTACCGAACCCTCTTTATCTATGTCAGAAATGTAGCCAAAAATCCTGATGAGGAAAAGTTTAGGAAGATTCGACTCAGTAACCCTTTGTTCCAGGAGAGAGTTGGGAGTTTGAAAGGAGGGATAGAGTTTCTGGAGCTTTGCGGGTTTGAGAGAGGAGGAGAGTTTCTGTACCTTCCCCGGGATAAAGTCGACCGGGGGGCTTTAGTCACTGCTGGATCACTGTTGAAATCTGCAATGACAAACCCCTTTTTTGGTGCAATATAA 936 41.99 MAFLEVKQKLLREIEDLGFPRARVVRALHSTGNVSTEAAINWLIDHENDPDIDQMPLVAIEIDLESPEPFHITEEMKRKAKELRDHVRKEKEEEEKKLERQREKDRIRSGKELQEAKRTAEEAERKRYIDSRQADKQEEKRAREKVLQKLEQDKIERRRNSGMLSERSESLDTKSNATEAGKKDELRSQNSLPATSVSKAVSMRECLRSLRRHQKDDSDKVRTAYRTLFIYVRNVAKNPDEEKFRKIRLSNPLFQERVGSLKGGIEFLELCGFERGGEFLYLPRDKVDRGALVTAGSLLKSAMTNPFFGAI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3562436 3567363 + Cp4.1LG11g05890.1 Cpe11g00595 477389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00595 311 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Cpe11g00595 311 MobiDBLite consensus disorder prediction 83 165 - -
Cpe11g00595 311 MobiDBLite consensus disorder prediction 83 197 - -
Cpe11g00595 311 Pfam UBA/TS-N domain 11 43 IPR015940 -
Cpe11g00595 311 Pfam PUB domain 219 289 IPR018997 -
Cpe11g00595 311 CDD UBA_PUB_plant 5 53 - -
Cpe11g00595 311 SMART PGNneu 223 284 - -
Cpe11g00595 311 MobiDBLite consensus disorder prediction 172 186 - -
Cpe11g00595 311 Gene3D - 8 53 - -
Cpe11g00595 311 SUPERFAMILY PUG domain-like 200 307 IPR036339 -
Cpe11g00595 311 Coils Coil 73 126 - -
Cpe11g00595 311 Gene3D - 205 299 - -
Cpe11g00595 311 PANTHER F13M7.16 PROTEIN 1 310 - -
Cpe11g00595 311 Coils Coil 133 156 - -
Cpe11g00595 311 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Cpe11g00595 311 PANTHER UBX DOMAIN-CONTAINING PROTEIN 1-LIKE 1 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01835 Cpe-Chr1:15607781 Cpe11g00595 Cpe-Chr11:3562436 3.69E-08 dispersed
Cpe11g00595 Cpe-Chr11:3562436 Cpe13g00353 Cpe-Chr13:3569584 3.52E-08 dispersed
Cpe17g00305 Cpe-Chr17:2068622 Cpe11g00595 Cpe-Chr11:3562436 1.08E-109 transposed
Cpe11g00595 Cpe-Chr11:3562436 Cpe07g00838 Cpe-Chr7:7602638 3.94E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00595 - K24348 csv:101210384 477.248