Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00597 ATGGGTCAAGGCACTCCCGGCGGACTCAACCAGCAGGGTGGTCTTCCGGGCGACCGCAAGCAAGATGATCCCAACAAGAAGGACAAAAAGTTCGAGCCAGCGGCGCCTCCGTCGCGTGTCGGCCGCAAGCAGCGGAAGCAGAAGGGTCCTGACGCCGCCTCCCGCCTACCGACGGTCACTCCACACACCAAGTGCAAGCTCCGCCTTCTGAAGCTCGATCGAGTCAAGGACTATTTGCTCATGGAGGAGGAGTTTGTTACCAATCAGGAACGGTTGAAGCCCCAGGAGGAGAAGAATGAAGAAGATAGATCTAAGGTCGACGACCTTCGTGGGTCGCCCATGAGCGTTGGGAATCTGGAGGAGCTGATTGACGAGAATCATGCGATTGTGTCGTCGTCTGTCGGTCCGGAGTACTATGTCGGGATCTTGTCGTTTGTTGACAAAGACCAACTGGAGCCTGGATGTGCGATTCTTATGCACAACAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGACGAGGTCGATCCCATGGTATCTGTTATGAAGATTGAGAAGGCTCCATTGGAATCCTACGCTGATATTGGTGGTTTAGATGCTCAGATCCAGGAGATTAAAGAAGCTGTAGAGCTTCCTCTTACTCATCCTGAGTTATATGAAGACATTGGAATTAAACCCCCTAAAGGAGTTATACTTTATGGGGAGCCCGGGACAGGGAAAACATTGCTCGCAAAGGCAGTGGCAAACTCCACTTCAGCCACTTTCTTGCGTGTAGTTGGAAGTGAATTGATCCAGAAGTACTTGGGAGATGGACCTAAATTGGTCAGGGAACTCTTTAGAGTTGCAGATGATCACTCCCCATCAATTGTATTCATTGATGAAATCGACGCAGTCGGTACAAAGAGGTATGATGCTCATTCTGGTGGCGAGCGTGAGATTCAAAGGACTATGCTTGAATTGCTGAACCAGTTGGATGGGTTTGACTCAAGAGGAGATGTTAAAGTGATTCTTGCTACAAATAGAATCGAAAGCCTCGATCCTGCCCTTTTACGACCTGGAAGAATAGATAGAAAAATTGAATTTCCCCTTCCAGATATAAAGACAAGAAGACGCATTTTTCAGATTCATACATCAAGGATGACACTAGCTGAGGATGTGAACTTAGAAGAGTTTGTAATGACCAAAGACGAATTTTCTGGGGCTGATATCAAAGCAATTTGCACCGAAGCTGGCTTGCTCGCTCTAAGAGAACGTAGAATGAAGGTGACTCATGCAGACTTTAAGAAAGCAAAAGATAAGGTTATGTTCAAAAAGAAAGAGGGAGTTCCAGAAGGACTTTACATGTAA 1344 47.17 MGQGTPGGLNQQGGLPGDRKQDDPNKKDKKFEPAAPPSRVGRKQRKQKGPDAASRLPTVTPHTKCKLRLLKLDRVKDYLLMEEEFVTNQERLKPQEEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKIEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDHSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3575328 3579319 - Cp4.1LG11g05970.1 Cpe11g00597 477391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00597 447 SMART AAA_5 225 364 IPR003593 -
Cpe11g00597 447 MobiDBLite consensus disorder prediction 90 112 - -
Cpe11g00597 447 Gene3D - 182 362 IPR027417 -
Cpe11g00597 447 PANTHER BNAA08G13550D PROTEIN 35 447 - -
Cpe11g00597 447 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 35 447 - -
Cpe11g00597 447 CDD AAA 195 362 - -
Cpe11g00597 447 Pfam Proteasomal ATPase OB C-terminal domain 116 169 IPR032501 -
Cpe11g00597 447 Pfam AAA+ lid domain 384 428 IPR041569 -
Cpe11g00597 447 Pfam ATPase family associated with various cellular activities (AAA) 229 362 IPR003959 GO:0005524|GO:0016887
Cpe11g00597 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 440 IPR027417 -
Cpe11g00597 447 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 82 434 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cpe11g00597 447 MobiDBLite consensus disorder prediction 90 109 - -
Cpe11g00597 447 Gene3D - 114 181 IPR012340 -
Cpe11g00597 447 MobiDBLite consensus disorder prediction 1 59 - -
Cpe11g00597 447 ProSitePatterns AAA-protein family signature. 332 350 IPR003960 GO:0005524|GO:0016887
Cpe11g00597 447 Gene3D - 367 441 - -
Cpe11g00597 447 MobiDBLite consensus disorder prediction 19 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00597 K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2 - csv:101209885 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00104 Cpe-Chr5:518507 Cpe11g00597 Cpe-Chr11:3575328 0 dispersed
Cpe11g00597 Cpe-Chr11:3575328 Cpe15g00120 Cpe-Chr15:939069 0 dispersed
Cpe12g00780 Cpe-Chr12:7059134 Cpe11g00597 Cpe-Chr11:3575328 4.14E-105 dispersed
Cpe17g00638 Cpe-Chr17:5202354 Cpe11g00597 Cpe-Chr11:3575328 1.51E-105 dispersed
Cpe11g00597 Cpe-Chr11:3575328 Cpe07g00840 Cpe-Chr7:7620469 6.77E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g407 . . . . . . . . Cmo05g00705 . . Cma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00597 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002192 2 2 1 3 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00597 Cpe_Chr11 FPKM 17.293089 22.050287 13.043261 12.550613 11.2495 9.894191 12.126086 4.419889 3.817508 4.583489