Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00600 ATGATGAACGCACCGGAGCAGGAGGAACACGGCCATCAAAGAGATTTCGGTACTCCAGTTCTGGAGAATTTTGAATCGAATTCGAGAAGATCAGCGAATCTGATCCCTATCTATCTTCCTATCTATAACACAACACATCATTCTGTGCGCACCATGGGGATTTTGTTTACTCGAATGTTTTCTTCGCTCTTCGGAAATAAGGAAGCTCGAATCCTTGTTCTTGGGCTCGATAATGCCGGGAAAACTACAATTCTCTATCGGCTCCAGATGGGGGAGGTTGTCTCGACAATTCCAACAATTGGGTTTAATGTTGAAACTGTGCAGTACAACAACATAAAATTCCAGGTCTGGGATCTTGGAGGACAGACTAGTATCAGACCATACTGGAGATGCTATTTTCCAAATACGCAAGCTATAATCTATGTGGTTGATTCAAGTGATACTGATAGGCTGGTGGTAGCAAAAGAGGAGTTTCATGCAATACTTGAGGAAGAAGAGTTGCGGGGTGCAGTTGCGTTAGTTTTTGCGAATAAGCAGGATCTTCCGGGTGCACTTGATGATGCTGCAGTCACAGAGGCTTTAGAGTTGCACAAGATTAAGAACCGCCAATGGGCTATATTTAAAGCCTCCGCTATAAAAGGAGAAGGTCTTTNTTTTTTTTTTTTTTTTTGGGTTTTTTTAATGATTCCAGAAACTTTAATACTTAGACCCTCCCCGACCGCCTAA 726 42.42 MMNAPEQEEHGHQRDFGTPVLENFESNSRRSANLIPIYLPIYNTTHHSVRTMGILFTRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVVAKEEFHAILEEEELRGAVALVFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKASAIKGEGLXFFFFFWVFLMIPETLILRPSPTA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3592195 3598001 + Cp4.1LG11g06000.1 Cpe11g00600 477394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00600 241 SMART rab_sub_5 69 236 - -
Cpe11g00600 241 Pfam ADP-ribosylation factor family 56 218 IPR006689 GO:0003924|GO:0005525
Cpe11g00600 241 SMART sar_sub_1 55 229 IPR006689 GO:0003924|GO:0005525
Cpe11g00600 241 ProSiteProfiles small GTPase Arf family profile. 62 241 - -
Cpe11g00600 241 SMART arf_sub_2 52 233 - -
Cpe11g00600 241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 227 IPR027417 -
Cpe11g00600 241 Gene3D - 49 228 IPR027417 -
Cpe11g00600 241 PANTHER ADP RIBOSYLATION FACTOR-RELATED 52 218 IPR024156 GO:0005525
Cpe11g00600 241 CDD Arl1 70 217 - -
Cpe11g00600 241 TIGRFAM small_GTP: small GTP-binding protein domain 67 216 IPR005225 GO:0005525
Cpe11g00600 241 PANTHER ADP-RIBOSYLATION FACTOR 1 52 218 - -
Cpe11g00600 241 MobiDBLite consensus disorder prediction 1 22 - -
Cpe11g00600 241 PRINTS GTP-binding SAR1 protein signature 70 93 IPR006689 GO:0003924|GO:0005525
Cpe11g00600 241 PRINTS GTP-binding SAR1 protein signature 170 191 IPR006689 GO:0003924|GO:0005525
Cpe11g00600 241 PRINTS GTP-binding SAR1 protein signature 125 150 IPR006689 GO:0003924|GO:0005525
Cpe11g00600 241 PRINTS GTP-binding SAR1 protein signature 98 122 IPR006689 GO:0003924|GO:0005525
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00844 Cpe11g00600 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00328 Cpe-Chr4:4024932 Cpe11g00600 Cpe-Chr11:3592195 5.72E-31 dispersed
Cpe08g00297 Cpe-Chr8:1897072 Cpe11g00600 Cpe-Chr11:3592195 9.58E-56 dispersed
Cpe11g00600 Cpe-Chr11:3592195 Cpe19g00808 Cpe-Chr19:6066328 1.49E-45 dispersed
Cpe15g00435 Cpe-Chr15:5490500 Cpe11g00600 Cpe-Chr11:3592195 6.12E-23 dispersed
Cpe17g00728 Cpe-Chr17:5781636 Cpe11g00600 Cpe-Chr11:3592195 4.04E-17 transposed
Cpe11g00600 Cpe-Chr11:3592195 Cpe07g00844 Cpe-Chr7:7654784 1.80E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00600 K07942 - csv:101209396 317.39