Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00603 ATGCACTCCTTCGCCGGCGGCTGGCCTGCCGTCGCCACCGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCCGCTTTCCTCTGCCTTCGCTGCGACGACCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGGCTCTGCGAGGTCTGCGAGCAAGCTCCTGCTACCATCACCTGCAATGCCGACGCCGCCGCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCCTCCGCCTCCGTTGCCTCTGTCTTCAAATTCCTCCTCCCGACTCAACACCAACACGACGTCGGACACCCTGATTTGAAATCAGAGGACATCTTCTTCTCCGATATGGATTCTTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCCAATCCCGGAACAGAGTCCACTACGCAACCCGCCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTACGGGACAAACAGCACTTCCTACGACGGAGAAGGTGGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGGTACGCTTCAAGGAAAGCTTATGCGGAAATCCGGCCAAGGGTTAAAGGGCGGTTCGTTAAACGGAGTGAAATGAAGTCGGAAATGGAAAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCGAGGGACGGCCAATACGGCGTCGTGCCAAGCCTTATAGTTTGA 855 57.08 MHSFAGGWPAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDDQIHSHTTGTRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVASVFKFLLPTQHQHDVGHPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPDQSNPGTESTTQPADYSTGNFCGFELCTGQTALPTTEKVVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPSLIV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3621019 3622162 + Cp4.1LG11g06020.1 Cpe11g00603 477397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00603 284 Pfam CCT motif 209 251 IPR010402 GO:0005515
Cpe11g00603 284 CDD Bbox1_BBX-like 59 102 - -
Cpe11g00603 284 ProSiteProfiles CCT domain profile. 209 251 IPR010402 GO:0005515
Cpe11g00603 284 SMART bboxneu5 55 102 IPR000315 GO:0008270
Cpe11g00603 284 SMART bboxneu5 13 53 IPR000315 GO:0008270
Cpe11g00603 284 Pfam B-box zinc finger 15 50 IPR000315 GO:0008270
Cpe11g00603 284 Pfam B-box zinc finger 57 100 IPR000315 GO:0008270
Cpe11g00603 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 197 281 IPR045281 GO:0009909
Cpe11g00603 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 184 IPR045281 GO:0009909
Cpe11g00603 284 MobiDBLite consensus disorder prediction 156 176 - -
Cpe11g00603 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 197 281 - -
Cpe11g00603 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 6 184 - -
Cpe11g00603 284 MobiDBLite consensus disorder prediction 162 176 - -
Cpe11g00603 284 ProSiteProfiles Zinc finger B-box type profile. 13 59 IPR000315 GO:0008270
Cpe11g00603 284 CDD Bbox1_BBX-like 17 59 - -
Cpe11g00603 284 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01287 Cpe11g00603 CCT
Cpe11g00603 Cpe18g00605 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00603 Cpe-Chr11:3621019 Cpe18g00605 Cpe-Chr18:6389288 9.01E-90 dispersed
Cpe11g00603 Cpe-Chr11:3621019 Cpe04g01287 Cpe-Chr4:10630461 1.12E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50243 PF00643 zf-B_box 1.40E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00603 - - cmax:111492359 560.451