Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00612 | ATGGAGAACATTCTCGACGAGTATCAGTACTACTGGGAAACGAACATGTTTCTGCAGACGGAGGAGTTCGACAGTTGGGGAGTGGACGAAGCGTTTTACGGTTCTTACGATTCAAGCTCGCCGGACGGAACGCCGTCGTCGTTAGAGGCGTCGAAGAACATCTTGTCGGAGAGGAATCGGAGGAAGAAGCTGAACGATAGGCTTCTGGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGGAAGAGAAGAGAATCGAAGCGGAGATCTCAGATCTGGAATCAGGCAAAATCAAGAACAGAGCAACAAACGAAGACGATGACGGAATCTTGAGGGAGAAGAGAACGAATAAGAATCGGCAAGTACCGGAGCCGCCGCCGTCTTTCCCGATCGAAGTTCTCGACTTGAGGGTGAATTACATGGGAGAGAAAACGATGGTGGTGAGCTTGACGTGCGGAAGAAGAAGCGACACCATAATGAAAATCTGCCAAGTTATTGAATCGCTTAAGATGAAGATTATTACGGCCACTATCACCATTGTTGCCAACAAGCTTTTGATCACGCTCTTCCTTGAGGAGGAGATAGCGGAGGAAGAGGAAGTAAAGGTAAAAATAGAAGCAGCAATTGCAGCAATTAGTGACCCACAAAACCCTATATGA | 714 | 47.62 | MENILDEYQYYWETNMFLQTEEFDSWGVDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAEEKRIEAEISDLESGKIKNRATNEDDDGILREKRTNKNRQVPEPPPSFPIEVLDLRVNYMGEKTMVVSLTCGRRSDTIMKICQVIESLKMKIITATITIVANKLLITLFLEEEIAEEEEVKVKIEAAIAAISDPQNPI | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3860199 | 3862091 | - | Cp4.1LG11g06150.1 | Cpe11g00612 | 477406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00612 | 237 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 45 | 111 | IPR036638 | GO:0046983 | |
Cpe11g00612 | 237 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 1 | 233 | - | - | |
Cpe11g00612 | 237 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 1 | 233 | - | - | |
Cpe11g00612 | 237 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983 | |
Cpe11g00612 | 237 | MobiDBLite | consensus disorder prediction | 117 | 144 | - | - | |
Cpe11g00612 | 237 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983 | |
Cpe11g00612 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983 | |
Cpe11g00612 | 237 | Coils | Coil | 87 | 114 | - | - | |
Cpe11g00612 | 237 | MobiDBLite | consensus disorder prediction | 117 | 138 | - | - | |
Cpe11g00612 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 55 | 97 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01327 | Cpe11g00612 | CCT | |
Cpe07g00759 | Cpe11g00612 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00612 | Cpe-Chr11:3860199 | Cpe16g00502 | Cpe-Chr16:6064235 | 7.07E-22 | dispersed | |
Cpe11g00612 | Cpe-Chr11:3860199 | Cpe18g00640 | Cpe-Chr18:6587133 | 1.60E-84 | wgd | |
Cpe11g00612 | Cpe-Chr11:3860199 | Cpe04g01327 | Cpe-Chr4:10890505 | 5.42E-80 | wgd | |
Cpe11g00612 | Cpe-Chr11:3860199 | Cpe07g00759 | Cpe-Chr7:6626873 | 3.89E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50244 | PF00010 | HLH | 7.00E-11 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00612 | - | - | cmo:103492501 | 339.732 |