Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00612 ATGGAGAACATTCTCGACGAGTATCAGTACTACTGGGAAACGAACATGTTTCTGCAGACGGAGGAGTTCGACAGTTGGGGAGTGGACGAAGCGTTTTACGGTTCTTACGATTCAAGCTCGCCGGACGGAACGCCGTCGTCGTTAGAGGCGTCGAAGAACATCTTGTCGGAGAGGAATCGGAGGAAGAAGCTGAACGATAGGCTTCTGGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGGAAGAGAAGAGAATCGAAGCGGAGATCTCAGATCTGGAATCAGGCAAAATCAAGAACAGAGCAACAAACGAAGACGATGACGGAATCTTGAGGGAGAAGAGAACGAATAAGAATCGGCAAGTACCGGAGCCGCCGCCGTCTTTCCCGATCGAAGTTCTCGACTTGAGGGTGAATTACATGGGAGAGAAAACGATGGTGGTGAGCTTGACGTGCGGAAGAAGAAGCGACACCATAATGAAAATCTGCCAAGTTATTGAATCGCTTAAGATGAAGATTATTACGGCCACTATCACCATTGTTGCCAACAAGCTTTTGATCACGCTCTTCCTTGAGGAGGAGATAGCGGAGGAAGAGGAAGTAAAGGTAAAAATAGAAGCAGCAATTGCAGCAATTAGTGACCCACAAAACCCTATATGA 714 47.62 MENILDEYQYYWETNMFLQTEEFDSWGVDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAEEKRIEAEISDLESGKIKNRATNEDDDGILREKRTNKNRQVPEPPPSFPIEVLDLRVNYMGEKTMVVSLTCGRRSDTIMKICQVIESLKMKIITATITIVANKLLITLFLEEEIAEEEEVKVKIEAAIAAISDPQNPI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3860199 3862091 - Cp4.1LG11g06150.1 Cpe11g00612 477406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00612 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 111 IPR036638 GO:0046983
Cpe11g00612 237 PANTHER TRANSCRIPTION FACTOR BHLH35 1 233 - -
Cpe11g00612 237 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 233 - -
Cpe11g00612 237 Gene3D - 46 114 IPR036638 GO:0046983
Cpe11g00612 237 MobiDBLite consensus disorder prediction 117 144 - -
Cpe11g00612 237 SMART finulus 54 103 IPR011598 GO:0046983
Cpe11g00612 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cpe11g00612 237 Coils Coil 87 114 - -
Cpe11g00612 237 MobiDBLite consensus disorder prediction 117 138 - -
Cpe11g00612 237 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01327 Cpe11g00612 CCT
Cpe07g00759 Cpe11g00612 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00612 Cpe-Chr11:3860199 Cpe16g00502 Cpe-Chr16:6064235 7.07E-22 dispersed
Cpe11g00612 Cpe-Chr11:3860199 Cpe18g00640 Cpe-Chr18:6587133 1.60E-84 wgd
Cpe11g00612 Cpe-Chr11:3860199 Cpe04g01327 Cpe-Chr4:10890505 5.42E-80 wgd
Cpe11g00612 Cpe-Chr11:3860199 Cpe07g00759 Cpe-Chr7:6626873 3.89E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50244 PF00010 HLH 7.00E-11 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00612 - - cmo:103492501 339.732