Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00617 ATGGGCACATTTCAGAGCTTCCGCAAAGCTTATGGCGCTCTCAAGGATTCTACCAAGGTCGGCCTCGCCAAGGTCAACAGCGAATACAAGGATTTGGATATCGCCATTGTCAAGGCTACCAATCACGTTGAATGTCCGCCTAAAGAACGTCATGTTCGAAGTCAGTTTTCTTTGTTCCAAACACCTGATTGTTGTATTTCTGATTCTGGATTTGGTGTTGGTGTTCGTGATGTGAATTTGTTTTCGATTCTTATCTGTTTGTTGGTATTTCCGATTAGAAGTCTGAATGGTGAAATTTGGTTCGAAAATGCTTATTTGGTATCCTTATTGGTAGAAATATTTTCGGCGACATCGGTGATGAGGCCTCGGGCGGATGTGGCGTACTGCATTCATGCATTGGCGAAGAGATTGTCGAAGACGCGGAGTTGGATCGTAGCCTTGAAGACATTGATAGTTGTACATAGGACATTGAGAGAGGGTGATCCAACCTTCAGGGAAGAACTTCTCAGCTATTCACACAGAGGACACATTCTCCAAATATCAAATTTCAAAGATGAATCAAGTCCTCTTGGTACAATGCTTCTCTTTAGTTTCTATGAATTTAACCAGTATGCTGATGAGGAGGCCTTTTATGATACTTGTTTCAAAATATTTCATTGTGAAGCTTGGGATTGTTCGGCATGGGTAAGGACGTATGCCCTTTATCTAGAAGAGCGACTTGAATGTTACAGAATCTTGAAGTATGATATTGAATCGGAACGTCTAACGAAAACGTCTCCAGGAGCGGCAAAGGTACATAGTAGGACACGCTTGCTGAACTGTGATGAGCTACTGGAGCAGCTACCCGCACTGCAGCAGCTTCTCTACCGCCTAAAGGGATGTCAGCCAGAAGGAGGAGCTTACAGTAATTATCTTATCCAGTATGCCCTGGCTCTGGTACTCAAAGAGAGCTTTAAAATATATTGTGCGATAAACGACGGAATAATAAATCTTGTGGACATGTTCTTTGATATGCCAAGGCATGATGCAGTTAAAGCTCTCAATATATACAAAAGAGCCAGCAACCAGGCTGAAAATCTTTCGGAATTTTACGAATATTGTAAAGGATTGGAACTTGCTAGAACATTTCAGTTTCCCACATTGAAGCAGGAATACCAAGAGGTGAAGCAATTGACTCAGGAACCGGAGAGTCCCGAAGAACCTGCCGAAATTGAAAAGGAGGTTGAAAATGTTGAGGACAACGAACCAGTGGTTGAGGACACAGAGGAAGAAGAATCCCAACAGAATGAAGAGGAGGAGGTCGCTGAATCTCCACCTCTAATTGCGACCGACGACAAAAGTGATCTTCTGGGTCTGAGTGAAATAAACCCTAAAGCTGCAGAAATAGAGAAAAATAATGCTTTAGCTCTCGCTATAACTACAGATGGGAATAATCCACCTTCTTCAAATCGTTCTTTGAGTGACATTGACAGTAGTGGTTGGGAGCTAGAGCTTGTAAGCACACCAAGCAATGATGCTGGTCCAACGGTCGATAGCAGACTGGTTTTTATCCTTCCCATTCACTTTTCTGATTCATTATTTTCCATCCTCGTTTTTTTAACTCTTCAATAA 1611 42.4 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKDLDIAIVKATNHVECPPKERHVRSQFSLFQTPDCCISDSGFGVGVRDVNLFSILICLLVFPIRSLNGEIWFENAYLVSLLVEIFSATSVMRPRADVAYCIHALAKRLSKTRSWIVALKTLIVVHRTLREGDPTFREELLSYSHRGHILQISNFKDESSPLGTMLLFSFYEFNQYADEEAFYDTCFKIFHCEAWDCSAWVRTYALYLEERLECYRILKYDIESERLTKTSPGAAKVHSRTRLLNCDELLEQLPALQQLLYRLKGCQPEGGAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFDMPRHDAVKALNIYKRASNQAENLSEFYEYCKGLELARTFQFPTLKQEYQEVKQLTQEPESPEEPAEIEKEVENVEDNEPVVEDTEEEESQQNEEEEVAESPPLIATDDKSDLLGLSEINPKAAEIEKNNALALAITTDGNNPPSSNRSLSDIDSSGWELELVSTPSNDAGPTVDSRLVFILPIHFSDSLFSILVFLTLQ 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3904621 3910705 + Cp4.1LG11g06180.1 Cpe11g00617 477411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00617 536 SUPERFAMILY GAT-like domain 267 383 - -
Cpe11g00617 536 MobiDBLite consensus disorder prediction 387 448 - -
Cpe11g00617 536 SUPERFAMILY ENTH/VHS domain 120 251 IPR008942 -
Cpe11g00617 536 PANTHER BNAA02G08290D PROTEIN 112 190 - -
Cpe11g00617 536 MobiDBLite consensus disorder prediction 398 432 - -
Cpe11g00617 536 PANTHER BNAA02G08290D PROTEIN 1 57 - -
Cpe11g00617 536 PANTHER BNAA02G08290D PROTEIN 387 506 - -
Cpe11g00617 536 PANTHER BNAA02G08290D PROTEIN 221 383 - -
Cpe11g00617 536 PANTHER CLATHRIN ASSEMBLY PROTEIN 387 506 IPR045192 GO:0048268|GO:0072583
Cpe11g00617 536 PANTHER CLATHRIN ASSEMBLY PROTEIN 112 190 IPR045192 GO:0048268|GO:0072583
Cpe11g00617 536 ProSiteProfiles ENTH domain profile. 79 250 IPR013809 -
Cpe11g00617 536 Gene3D ANTH domain 263 417 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cpe11g00617 536 SMART enth_2 30 250 IPR013809 -
Cpe11g00617 536 Pfam ANTH domain 31 54 IPR011417 GO:0005543
Cpe11g00617 536 Pfam ANTH domain 112 391 IPR011417 GO:0005543
Cpe11g00617 536 Gene3D - 5 250 IPR008942 -
Cpe11g00617 536 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 57 IPR045192 GO:0048268|GO:0072583
Cpe11g00617 536 PANTHER CLATHRIN ASSEMBLY PROTEIN 221 383 IPR045192 GO:0048268|GO:0072583
Cpe11g00617 536 CDD ANTH_N 32 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01385 Cpe11g00617 CCT
Cpe07g00755 Cpe11g00617 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00617 Cpe-Chr11:3904621 Cpe18g00517 Cpe-Chr18:5884576 1.08E-08 dispersed
Cpe11g00617 Cpe-Chr11:3904621 Cpe07g00755 Cpe-Chr7:6588215 2.73E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00617 K20044 - csv:101204565 549.28