Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00623 ATGGTGGGTGAGGTGGCAATGGAGAAGAATATGAAAGTAACAAGAGAGAACAAATTTGAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTCCCTCTCATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTTATTGTCCCAACAAGAACTCTCATTGTCGTACATGATTCCCTCCTTGTTTCTCAGCTTCAAATCGCGAAAGCACTAAATGAAGCAAGATTGGAGGCAAATGTACAATTAAAAGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGGTTGCTTCTAACAGCATCCTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTGGCCGTCGCAGCGGTGGCCGCCGGCATCTTCCCCATTCTCCTAAAAGCCATTTCCGCCGTTCGCCATCTCAGGATCGATGTCAACATTCTTGCCATTATTGCTGTGGTGGGGACAATCAGTATGAATGATTACATGGAAGCTGGGAGCATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCCAATGCTGCAATGTGGTCGCTGATGAGCCTGGCCCCTCAGAAGGCCACCATAGCTGAAACAGGAGAGGTTGTGGAGGTAAAAGAGGTGAAATTGAAGAGTGTGTTGGCAGTGAAGGGTGGTGAAGTTATTCCCATTGATGGCATTGTTGTGGATGGAAAATGTGATGTTGATGAGAAATCTTTGACTGGAGAGACTTTCCCAGTTCCCAAACTTAAAGGTTATATTAGTGTTCAAACCACTGTTGTTGCTGAGGACTGCGTGGTGGCAAAGATGGCTGAGTTTGTAGAAGAAGCTCAAAACAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACTCCAGCTGTAGTTGTCATATCAGCTTGTGTAGCAGCCATTCCAGCTGCACTGAGAGTTCACAATCTCACCCATTGGTTTCACTTAGCTCTGGTGGTCTTAGTGAGTGCCTGTCCCTGTGCCCTTATCCTCTCCACCCCGGTCGCCGNCAAAAACACAGCATGTTTTTTGTATGCAGCTGTAGTTGTCATATCAGCTTGTGTAGCAGCCATTCCAGCTGCACTGAGAGTTCACAATCTCACCCATTGGTTTCACTTAGCTCTGGTGGTCTTAGTGAGTGCCTGTCCCTGTGCCCTTATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTCACCAAGGCCGCCATGGCCGGTGTTCTCATCAAAGGCAGCGACCACCTTGAAGTTCTTGCAAAGATTAAGGTTGTAGCCTTCGACAAGACTGGCACAATCACTAGAGGTGAATTTGTGGTGACAAATTTTGAAGCTCTACGAGATGATATCAGCTTCCACACCTTACTTCATTGGGTTTCGAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTCAACCATGCAAAGCTGCTTTCTATTGATATTAAACCTGAAAAAGTTGAGGAATTTGAGAACTTTCCTGGAGAAGGTGTTCGTGGGAAGATTGATGGGAAGGATATTTACATTGGAAGTACAAAAATTGCTGCCCGAGCTGGCTGCTCGTCAGGAGCTAAAGAAGGCATGGAGGAGCTCAAGAGTTTTGGCATTAAAACAGCTATGCTCACTGGGGACTGTAATGCAGCCGCCATGCACGCCCAACAACAGCTGGAGAACGCGGTTGATGTGATCCATTCAGAGCTTCTTCCAAAGGAGAAAGCAAATGTGATAAAAGAATTCAAAAGGGATTATGGAGCAACCGCCATGGTTGGCGATGGCTTAAATGATACCCCAGCATTAGCCACAGCTGATATTGGCATATCAATGGGCATTTCTGGTTCACCTCTCGCTACTCAAACTGGGAATGTCATCTTAATGTCAAATGACATCACAAAAATCCCACAAGCCATCAAATTAGCAAGGAAATCTCATGCAAAAGTTGTTCAAAATGTCATTTTGTCAATCACTACCAAGATTGCAATCCTTGGCTTGGCCATCGCCGGACATCCGCTCGTTTGGGCGGCCGTTCTCGCCGATGTC 2109 46.04 MVGEVAMEKNMKVTRENKFERSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLVSQLQIAKALNEARLEANVQLKGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAVRHLRIDVNILAIIAVVGTISMNDYMEAGSIVFLFSIAEWLESRASHKANAAMWSLMSLAPQKATIAETGEVVEVKEVKLKSVLAVKGGEVIPIDGIVVDGKCDVDEKSLTGETFPVPKLKGYISVQTTVVAEDCVVAKMAEFVEEAQNNKSKTQRFIDECAKYYTPAVVVISACVAAIPAALRVHNLTHWFHLALVVLVSACPCALILSTPVAXKNTACFLYAAVVVISACVAAIPAALRVHNLTHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLAKIKVVAFDKTGTITRGEFVVTNFEALRDDISFHTLLHWVSSIESKSSHPMAAALVNHAKLLSIDIKPEKVEEFENFPGEGVRGKIDGKDIYIGSTKIAARAGCSSGAKEGMEELKSFGIKTAMLTGDCNAAAMHAQQQLENAVDVIHSELLPKEKANVIKEFKRDYGATAMVGDGLNDTPALATADIGISMGISGSPLATQTGNVILMSNDITKIPQAIKLARKSHAKVVQNVILSITTKIAILGLAIAGHPLVWAAVLADV 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3953260 3957604 + Cp4.1LG11g06220.1 Cpe11g00623 477417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00623 703 ProSiteProfiles Heavy-metal-associated domain profile. 21 87 IPR006121 GO:0046872
Cpe11g00623 703 Gene3D - 458 544 IPR023299 GO:0000166
Cpe11g00623 703 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 9 360 - -
Cpe11g00623 703 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 368 546 - -
Cpe11g00623 703 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 544 703 - -
Cpe11g00623 703 SUPERFAMILY Calcium ATPase, transmembrane domain M 367 685 IPR023298 -
Cpe11g00623 703 Gene3D - 439 457 IPR023214 -
Cpe11g00623 703 Gene3D - 547 664 IPR023214 -
Cpe11g00623 703 SUPERFAMILY Calcium ATPase, transduction domain A 216 284 IPR008250 -
Cpe11g00623 703 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 367 689 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe11g00623 703 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 176 362 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe11g00623 703 Gene3D - 16 89 - -
Cpe11g00623 703 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 9 360 - -
Cpe11g00623 703 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 368 546 - -
Cpe11g00623 703 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 544 703 - -
Cpe11g00623 703 SUPERFAMILY HAD-like 445 702 IPR036412 -
Cpe11g00623 703 Pfam haloacid dehalogenase-like hydrolase 443 538 - -
Cpe11g00623 703 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 362 IPR023298 -
Cpe11g00623 703 Pfam E1-E2 ATPase 204 360 - -
Cpe11g00623 703 PRINTS P-type cation-transporting ATPase superfamily signature 637 649 - -
Cpe11g00623 703 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Cpe11g00623 703 PRINTS P-type cation-transporting ATPase superfamily signature 558 568 - -
Cpe11g00623 703 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Cpe11g00623 703 PRINTS P-type cation-transporting ATPase superfamily signature 613 632 - -
Cpe11g00623 703 Gene3D - 168 381 - -
Cpe11g00623 703 Pfam haloacid dehalogenase-like hydrolase 546 627 - -
Cpe11g00623 703 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Cpe11g00623 703 SUPERFAMILY HMA, heavy metal-associated domain 16 86 IPR036163 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00623 Cpe-Chr11:3953260 Cpe19g01198 Cpe-Chr19:8043954 8.34E-60 dispersed
Cpe11g00623 Cpe-Chr11:3953260 Cpe11g00625 Cpe-Chr11:3984038 1.09E-18 proximal
Cpe11g00623 Cpe-Chr11:3953260 Cpe18g00631 Cpe-Chr18:6534383 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00623 K01534 - jre:109019139 850.892