Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00650 | ATGAAGACGCCGGCGAATGGTGCCGCCGCCATGCCTAATTCTAGTGAAGGTGGATTGGAGAAGAAGACCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGCGAACCTACCACCGGCCGGTTACCACGTAGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCCTTGAAGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAACGTAACATTACATGCCGACCCGGAAACGGATGAAGTATATGCACAAATGACACTATTACCAGTTCCTTCTTTTGATAAGGATGCATTGTTGAGATCAGATCTATCTCTGAAATCTAATAAGCCTCAGCCTGAGTTCTTCTGTAAAACGTTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCTATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGACAACCAAAACGGCATTTACTAACAACTGGTTGGAGCTTGTTTGTTAGTGGAAAGAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAGCAACAGCTTCTATTGGGCATCAGGCGAGCAAACAGGCAACCAACCAACTTATCATCATCAGTGTTGTCAACTGATAGTATGCATATTGGTATTCTTGCAGCAGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTTGTTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCTAACCAAATATCACTCGGTATGCGCTTCAGAATGATGTTTGAGACAGAAGAGTCTGGAACTAGAAGGTATATGGGTACTATCACAGGTATAAGTGATCTTGATTCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCAACTGGAGGAGAACGACGAAATCGAGTCTCGATATGGGAGATCGAGCCAGTTATCGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCGAAACGTCCGAGGCAACCGGGAATGCCAGATGATGACTCCTCTGATTTAGATGGTATATGTAAAAGAACAATGTTTGGGGACGATTTTTGCATGAAAGATCCACAGGGATATCCCGGCCTGAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATGCAATGCAGCCAAGTTACATGCATTCGTTTTCGGGGTCTATGCTTCCGAATCTTGGCGGAGTCGATATTTCTCGACAACTTGGCTTGTCGAACACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAGAGGCTTCTTTCTCAAGCTCAGCAGTTGGATCAGCTACCTAAACTACCGTCAAGTATGAACTCAATGGGGTCTGTTGTGCAGCCATCTCAGCAGTTGGATGATATGTCTCAGCAGACCCGTTCGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAAGCTCAAATAATGCAGCAGCAGCAGCCTCACACTAATGGGATCGTACTGCAGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAATCAATCACAGACAATGAATCAGTCCCCGCTCCCGGATCCGATGATTCATCAGCTGCAAATGTCGGATAATCAGGTTCCGATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAGCAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTGTTCTTCAGCCTGCTCAACTACCGGAACAGTTGAGACAGTCGGTGGATGCGTCGTTTTCCCGGTCCATGTCGTCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGTCCCTCCATCAAACGTGTCACCGCAGCAGGCAGCGAAGAGCAACGGCACGACGAATAACCGTTTCTCAAATCAGCATATGCAGCCGAAACTTCCACAACTACATCAACCACCTCCATCTACTGTACTTTCTGATATGTCTAGACCAGTAGGACTTCCTCCTACTCAAACATACAATCAGCTCTCTGCAGCTACTAGCAGCGTAATAACGGGAGCAGCAGCGGCTGGCCAATCTGGAGTCACTGATGACATACCATCTTGCTCCACGTCACCGTCCACGAACAACGGTCCGAGTTTGATTCAGCCAGTAAACAATGGAAGGGTTCATCGAAGCACGGGATTGGTTGAGGATGTTGCTCAATCTTCTGCTACAATATTCAGTACAAATACCTTGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGGATTTTCGCACAACAAACGTTCTTGAGTGGCGTCGTTTCGCAGACCGATTTCTTGGACACGTCTTCCTCAACGACCTCGGCTTGCCTTTCACAGAATGAGGCTCAGTTGCAGCAGAATAACGTGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATAGTACTCAGGATTTGGAAGTACCAACCGATCTCCATAACATTCCGTACGGGACGAATGTCGATGGACCATTGGTAGCGCAGTTAAACTCCGATCCTTTGTTAAACAAAGGCATTGGAGAGTTAGGGAAGGACTTCTCCAATAACTTTTCTTCTGGGGCTATGCTCACCACCTATGACGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAGTCATTCGGTATTCCGGACATGACGTTTAATTCTATGGATTCAGCGATGAACGATAACGCGTTCTTGAATCGAAACCAATGGGCTCCTCCGCCTCCGTTCCAGCGTATGCGAACCTACACGAAGGTTTACAAACGTGGAGCTGTTGGGAGATCAATTGATATCACCAGTTACTCAGGTTACGACGAGCTTAAACAAGACCTTGCCCGTCGGTTCGGCATTGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTCGTTTACGTCGATCATGAAAACGACGTTTTACTCGTAGGCGACGACCCATGGGAGGACTTCGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGCGATTTCGGGAACGGTGTCCTACTGAACCAAGCCTGCAGTAGCTCAGATGGTGGAAATGCTTAA | 3216 | 46.98 | MKTPANGAAAMPNSSEGGLEKKTINPELWQACAGPLANLPPAGYHVVYFPQGHSEQVAASLKKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLSLKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGICKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNAMQPSYMHSFSGSMLPNLGGVDISRQLGLSNTQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSMGSVVQPSQQLDDMSQQTRSNLINQNAVSSQIQAQIMQQQQPHTNGIVLQQNQQLQRSLPQNQSQTMNQSPLPDPMIHQLQMSDNQVPMQMLQKLQQQQQQQQSLLAQQSVVLQPAQLPEQLRQSVDASFSRSMSSNQMLDIPQSTPAAVPPSNVSPQQAAKSNGTTNNRFSNQHMQPKLPQLHQPPPSTVLSDMSRPVGLPPTQTYNQLSAATSSVITGAAAAGQSGVTDDIPSCSTSPSTNNGPSLIQPVNNGRVHRSTGLVEDVAQSSATIFSTNTLTAVKPSLNISKNQSHGIFAQQTFLSGVVSQTDFLDTSSSTTSACLSQNEAQLQQNNVMSFNSQPMLFRDSTQDLEVPTDLHNIPYGTNVDGPLVAQLNSDPLLNKGIGELGKDFSNNFSSGAMLTTYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSAMNDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITSYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLLNQACSSSDGGNA | 1071 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4296398 | 4304504 | + | Cp4.1LG11g06740.1 | Cpe11g00650 | 477444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00650 | 1071 | CDD | B3_DNA | 130 | 222 | IPR003340 | GO:0003677 | |
Cpe11g00650 | 1071 | Gene3D | - | 955 | 1048 | - | - | |
Cpe11g00650 | 1071 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe11g00650 | 1071 | MobiDBLite | consensus disorder prediction | 550 | 575 | - | - | |
Cpe11g00650 | 1071 | MobiDBLite | consensus disorder prediction | 729 | 748 | - | - | |
Cpe11g00650 | 1071 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 1065 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe11g00650 | 1071 | Pfam | AUX/IAA family | 956 | 1044 | IPR033389 | - | |
Cpe11g00650 | 1071 | SMART | B3_2 | 131 | 233 | IPR003340 | GO:0003677 | |
Cpe11g00650 | 1071 | MobiDBLite | consensus disorder prediction | 622 | 690 | - | - | |
Cpe11g00650 | 1071 | MobiDBLite | consensus disorder prediction | 491 | 514 | - | - | |
Cpe11g00650 | 1071 | ProSiteProfiles | B3 DNA-binding domain profile. | 131 | 233 | IPR003340 | GO:0003677 | |
Cpe11g00650 | 1071 | ProSiteProfiles | PB1 domain profile. | 959 | 1044 | IPR000270 | GO:0005515 | |
Cpe11g00650 | 1071 | Pfam | Auxin response factor | 257 | 340 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cpe11g00650 | 1071 | Gene3D | - | 295 | 365 | - | - | |
Cpe11g00650 | 1071 | SUPERFAMILY | DNA-binding pseudobarrel domain | 122 | 260 | IPR015300 | - | |
Cpe11g00650 | 1071 | PANTHER | AUXIN RESPONSE FACTOR | 1 | 1065 | - | - | |
Cpe11g00650 | 1071 | Gene3D | - | 129 | 232 | IPR015300 | - | |
Cpe11g00650 | 1071 | MobiDBLite | consensus disorder prediction | 622 | 692 | - | - | |
Cpe11g00650 | 1071 | Pfam | B3 DNA binding domain | 131 | 232 | IPR003340 | GO:0003677 | |
Cpe11g00650 | 1071 | SUPERFAMILY | CAD & PB1 domains | 971 | 1038 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00083 | Cpe-Chr2:423119 | Cpe11g00650 | Cpe-Chr11:4296398 | 1.16E-36 | dispersed | |
Cpe07g01081 | Cpe-Chr7:9561062 | Cpe11g00650 | Cpe-Chr11:4296398 | 6.08E-51 | dispersed | |
Cpe11g00650 | Cpe-Chr11:4296398 | Cpe11g01202 | Cpe-Chr11:9801668 | 2.60E-40 | dispersed | |
Cpe18g00939 | Cpe-Chr18:8268551 | Cpe11g00650 | Cpe-Chr11:4296398 | 5.17E-17 | dispersed | |
Cpe19g00413 | Cpe-Chr19:3647403 | Cpe11g00650 | Cpe-Chr11:4296398 | 1.57E-82 | dispersed | |
Cpe11g00650 | Cpe-Chr11:4296398 | Cpe07g00768 | Cpe-Chr7:6798055 | 1.79E-115 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50246 | PF02309 | AUX_IAA | 1.40E-07 | CL0072 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00650 | - | - | csv:101205542 | 1838.16 |