Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00650 ATGAAGACGCCGGCGAATGGTGCCGCCGCCATGCCTAATTCTAGTGAAGGTGGATTGGAGAAGAAGACCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGCGAACCTACCACCGGCCGGTTACCACGTAGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCCTTGAAGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAACGTAACATTACATGCCGACCCGGAAACGGATGAAGTATATGCACAAATGACACTATTACCAGTTCCTTCTTTTGATAAGGATGCATTGTTGAGATCAGATCTATCTCTGAAATCTAATAAGCCTCAGCCTGAGTTCTTCTGTAAAACGTTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCTATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGACAACCAAAACGGCATTTACTAACAACTGGTTGGAGCTTGTTTGTTAGTGGAAAGAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAGCAACAGCTTCTATTGGGCATCAGGCGAGCAAACAGGCAACCAACCAACTTATCATCATCAGTGTTGTCAACTGATAGTATGCATATTGGTATTCTTGCAGCAGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTTGTTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCTAACCAAATATCACTCGGTATGCGCTTCAGAATGATGTTTGAGACAGAAGAGTCTGGAACTAGAAGGTATATGGGTACTATCACAGGTATAAGTGATCTTGATTCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCAACTGGAGGAGAACGACGAAATCGAGTCTCGATATGGGAGATCGAGCCAGTTATCGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCGAAACGTCCGAGGCAACCGGGAATGCCAGATGATGACTCCTCTGATTTAGATGGTATATGTAAAAGAACAATGTTTGGGGACGATTTTTGCATGAAAGATCCACAGGGATATCCCGGCCTGAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATGCAATGCAGCCAAGTTACATGCATTCGTTTTCGGGGTCTATGCTTCCGAATCTTGGCGGAGTCGATATTTCTCGACAACTTGGCTTGTCGAACACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAGAGGCTTCTTTCTCAAGCTCAGCAGTTGGATCAGCTACCTAAACTACCGTCAAGTATGAACTCAATGGGGTCTGTTGTGCAGCCATCTCAGCAGTTGGATGATATGTCTCAGCAGACCCGTTCGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAAGCTCAAATAATGCAGCAGCAGCAGCCTCACACTAATGGGATCGTACTGCAGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAATCAATCACAGACAATGAATCAGTCCCCGCTCCCGGATCCGATGATTCATCAGCTGCAAATGTCGGATAATCAGGTTCCGATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAGCAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTGTTCTTCAGCCTGCTCAACTACCGGAACAGTTGAGACAGTCGGTGGATGCGTCGTTTTCCCGGTCCATGTCGTCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGTCCCTCCATCAAACGTGTCACCGCAGCAGGCAGCGAAGAGCAACGGCACGACGAATAACCGTTTCTCAAATCAGCATATGCAGCCGAAACTTCCACAACTACATCAACCACCTCCATCTACTGTACTTTCTGATATGTCTAGACCAGTAGGACTTCCTCCTACTCAAACATACAATCAGCTCTCTGCAGCTACTAGCAGCGTAATAACGGGAGCAGCAGCGGCTGGCCAATCTGGAGTCACTGATGACATACCATCTTGCTCCACGTCACCGTCCACGAACAACGGTCCGAGTTTGATTCAGCCAGTAAACAATGGAAGGGTTCATCGAAGCACGGGATTGGTTGAGGATGTTGCTCAATCTTCTGCTACAATATTCAGTACAAATACCTTGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGGATTTTCGCACAACAAACGTTCTTGAGTGGCGTCGTTTCGCAGACCGATTTCTTGGACACGTCTTCCTCAACGACCTCGGCTTGCCTTTCACAGAATGAGGCTCAGTTGCAGCAGAATAACGTGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATAGTACTCAGGATTTGGAAGTACCAACCGATCTCCATAACATTCCGTACGGGACGAATGTCGATGGACCATTGGTAGCGCAGTTAAACTCCGATCCTTTGTTAAACAAAGGCATTGGAGAGTTAGGGAAGGACTTCTCCAATAACTTTTCTTCTGGGGCTATGCTCACCACCTATGACGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAGTCATTCGGTATTCCGGACATGACGTTTAATTCTATGGATTCAGCGATGAACGATAACGCGTTCTTGAATCGAAACCAATGGGCTCCTCCGCCTCCGTTCCAGCGTATGCGAACCTACACGAAGGTTTACAAACGTGGAGCTGTTGGGAGATCAATTGATATCACCAGTTACTCAGGTTACGACGAGCTTAAACAAGACCTTGCCCGTCGGTTCGGCATTGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTCGTTTACGTCGATCATGAAAACGACGTTTTACTCGTAGGCGACGACCCATGGGAGGACTTCGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGCGATTTCGGGAACGGTGTCCTACTGAACCAAGCCTGCAGTAGCTCAGATGGTGGAAATGCTTAA 3216 46.98 MKTPANGAAAMPNSSEGGLEKKTINPELWQACAGPLANLPPAGYHVVYFPQGHSEQVAASLKKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLSLKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGICKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNAMQPSYMHSFSGSMLPNLGGVDISRQLGLSNTQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSMGSVVQPSQQLDDMSQQTRSNLINQNAVSSQIQAQIMQQQQPHTNGIVLQQNQQLQRSLPQNQSQTMNQSPLPDPMIHQLQMSDNQVPMQMLQKLQQQQQQQQSLLAQQSVVLQPAQLPEQLRQSVDASFSRSMSSNQMLDIPQSTPAAVPPSNVSPQQAAKSNGTTNNRFSNQHMQPKLPQLHQPPPSTVLSDMSRPVGLPPTQTYNQLSAATSSVITGAAAAGQSGVTDDIPSCSTSPSTNNGPSLIQPVNNGRVHRSTGLVEDVAQSSATIFSTNTLTAVKPSLNISKNQSHGIFAQQTFLSGVVSQTDFLDTSSSTTSACLSQNEAQLQQNNVMSFNSQPMLFRDSTQDLEVPTDLHNIPYGTNVDGPLVAQLNSDPLLNKGIGELGKDFSNNFSSGAMLTTYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSAMNDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITSYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLLNQACSSSDGGNA 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4296398 4304504 + Cp4.1LG11g06740.1 Cpe11g00650 477444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00650 1071 CDD B3_DNA 130 222 IPR003340 GO:0003677
Cpe11g00650 1071 Gene3D - 955 1048 - -
Cpe11g00650 1071 MobiDBLite consensus disorder prediction 1 20 - -
Cpe11g00650 1071 MobiDBLite consensus disorder prediction 550 575 - -
Cpe11g00650 1071 MobiDBLite consensus disorder prediction 729 748 - -
Cpe11g00650 1071 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1065 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe11g00650 1071 Pfam AUX/IAA family 956 1044 IPR033389 -
Cpe11g00650 1071 SMART B3_2 131 233 IPR003340 GO:0003677
Cpe11g00650 1071 MobiDBLite consensus disorder prediction 622 690 - -
Cpe11g00650 1071 MobiDBLite consensus disorder prediction 491 514 - -
Cpe11g00650 1071 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Cpe11g00650 1071 ProSiteProfiles PB1 domain profile. 959 1044 IPR000270 GO:0005515
Cpe11g00650 1071 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe11g00650 1071 Gene3D - 295 365 - -
Cpe11g00650 1071 SUPERFAMILY DNA-binding pseudobarrel domain 122 260 IPR015300 -
Cpe11g00650 1071 PANTHER AUXIN RESPONSE FACTOR 1 1065 - -
Cpe11g00650 1071 Gene3D - 129 232 IPR015300 -
Cpe11g00650 1071 MobiDBLite consensus disorder prediction 622 692 - -
Cpe11g00650 1071 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Cpe11g00650 1071 SUPERFAMILY CAD & PB1 domains 971 1038 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00083 Cpe-Chr2:423119 Cpe11g00650 Cpe-Chr11:4296398 1.16E-36 dispersed
Cpe07g01081 Cpe-Chr7:9561062 Cpe11g00650 Cpe-Chr11:4296398 6.08E-51 dispersed
Cpe11g00650 Cpe-Chr11:4296398 Cpe11g01202 Cpe-Chr11:9801668 2.60E-40 dispersed
Cpe18g00939 Cpe-Chr18:8268551 Cpe11g00650 Cpe-Chr11:4296398 5.17E-17 dispersed
Cpe19g00413 Cpe-Chr19:3647403 Cpe11g00650 Cpe-Chr11:4296398 1.57E-82 dispersed
Cpe11g00650 Cpe-Chr11:4296398 Cpe07g00768 Cpe-Chr7:6798055 1.79E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50246 PF02309 AUX_IAA 1.40E-07 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00650 - - csv:101205542 1838.16