Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00655 ATGGGTAAGAACAGAAGAGAAGAGGTCGATCGAAGAAATTTAATGGCGAGAGGCGGAGCTCAGAAGAAAGAGATGGTGGTGGCGATCGACAAAGACAAAGGCAGCAAACAAGCTTTGAAATGGACAATCGATCGCCTTCTGAGCAGAGGCCAAGTCGTTACTCTGCTTCACGTTAAACACAAATCCTCTTCCGCCGCGAATGCGACGACGAATCTCAATGCCGATTTCGATCACGGCGAGACCGCTTTGTACAAACATCATCACATCGACAATCATATCAACGATCAGTTCTTCCTTCCTTTTCGTTGCATTTGCACAAGTAGCAATATAACATGCAATGAGGTGATGTTAGAGGGATCAGACATTCCAAAGACATTAATAAATTACGTCTCCAAAAACGTTGTAGACATTTTAGTAATGGGAGCACCTACAAGATCAGCCGCACAAATTTACAAGAGATTCAAATCAGATGTGCCAAGCAGTGTATCAAAAGGAGCACCAGATTTCTGCACAGTTTACACCATCGGTCACAGAGGGAAAGTTTCGGTGAGGCAGCCCACAGTTCCAGTGCCGGCAAGGCCGATTGCTCCGCCGCGCAACCAGTCGCTGCGTGCCGCGCCGCGCCCCCAGCTGCTGCATCAACGCACTAATGTCTCCCAACTCCTGGCTGAGCCCAACCAACTATGGTCCAAATCATCTAGATGCTTAGAGACTCAAAGTAGTATGAGGGTTCCTCATGCCCTTCAACAATATTTGGACTTCAAGTCGCCGTTCACAAGGCAGGGTTCAAGGGCTTCAGTGAGCAAAAGGGTGGACCCATCGACGGTGGATTCCGACAATTCGTTTGTCAGCTGCGGCAGGCGGAGCGTGGACCGTGGCTTCTCGGGGGCGTTGTCCTACGCCACCTGCAGAGACTCGTATCGACTTTCTAACGTCTCTGAGTCGGAAACTTCCAGCCCCGGTCCGCCTCCGCCTTCGCCTTCGCCTACATTGGAAATCGAAAGTGGAATGAACAAGTCCATTCATAATAACAACTTCTCTTCTTACTCTCAGGATCTCTCCTCTTGCTCCATAGAAAGCGACACATTCACTCGCCCTTCTCACTCTCATGCCCAGGACGATGTTGAAGCTGAGATGAGAAGGCTGAAACTGGAGCTCAAACAAACCATGGACATGTACAGTACGGCCTGTAAAGAAGCCCTAAATGCTAATCGAAAGGCGACCGAGCTCCATCGCTGGAAGGTGGAAGAAGAGCAAAGGTTCGAAGAGGCGAGAATGGCGGAGGAAGCAGCATTAGCAATGGCAGAGAGGGAGAAGATGAAATGCCAAGCAGCAATTAAGGCAGCTGAAGCCGCTCAGAAGATCGCAGAACTCGAGGCGAGGAAAAGAGAGAACGCAGAGAGAATGGCAGACATGGAAGCAGAGGAAACGAAAAAAGCACTCTCAGGATTCGGCCATGGAGATATTGGATACAGAAAATACACAATCGAAGAAATTGAAATCGCCACGAACCACTTCTCTAATTCTTTGAAGATCGGCGAAGGCGGTTACGGTCCAGTCTTCCGTGGAAAACTCGACCATACGCCGGTGGCCATCAAGGTTCTCCGGCCGGACGCTGCTCATGGCCGATCGCAATTTCAGCAAGAAGTTGAAGTTCTAAGCTGCATTCGACATCCGAATATGGTTTTACTTCTCGGAGCCTGTCCTGAGAACGGTTGTTTAGTTTACGAATTCATGGGGAACGGAAGCTTAGAAGACTGTCTCTTCCGAAAAGCCAACAATCCAGTTCTTTCATGGCAGTTACGATTCCGAATCGCGGCGGAGATCGCGACCGGACTTCTCTTCCTGCACCAACACAGACCAGAGCCAATCGTACACCGTGATCTGAAACCAGGGAACATTTTGCTAGATCGGAACTACGTGAGCAAAATCAGCGACGTCGGACTGGCGAGGCTAGTTCCTCTATCAGTGGCCGATTCAGTGACTCAGTATCGGATGACGGCGACGGCAGGAACGTTCTGCTACATCGATCCAGAGTATCAGCTAACAGGATTGCTAGGGATTCAATCGGACATTTACTCGCTGGGCGTGATGCTTCTTCAAATAGTCACTGGCAGGCCGCCGATCGGACTGGCACACGCCGTCGAGAGGGCGATTCAGAAGGGAAGTTTTGCAGAAATGCTCGATCCGGAGGTAAAGGACTGGCCATTTGAAGACGCGTTGAAGTTCGCGAAGCTTTCGATGAAATGTACAGAGATGAGGAAGAGGGATCGACCGGATCTTGGGAAGGTGGTGCTGCCGGAGCTCAATCGGTTGAGAGCGATGGCGGAAGAGAGTATGGGAATTCGGGCGTTCAACGGCAGCAGTGCATCTTCATCGCCAGATACAAGCCAGACATCTTCTTCTCAGGAACCGATGAGAATACATCAAGAACAATGTGGAGCTTGGGTTGAAAGCTCCAGCAGCCAATCAAATAGTAGCACGTCATCATAG 2493 50.14 MGKNRREEVDRRNLMARGGAQKKEMVVAIDKDKGSKQALKWTIDRLLSRGQVVTLLHVKHKSSSAANATTNLNADFDHGETALYKHHHIDNHINDQFFLPFRCICTSSNITCNEVMLEGSDIPKTLINYVSKNVVDILVMGAPTRSAAQIYKRFKSDVPSSVSKGAPDFCTVYTIGHRGKVSVRQPTVPVPARPIAPPRNQSLRAAPRPQLLHQRTNVSQLLAEPNQLWSKSSRCLETQSSMRVPHALQQYLDFKSPFTRQGSRASVSKRVDPSTVDSDNSFVSCGRRSVDRGFSGALSYATCRDSYRLSNVSESETSSPGPPPPSPSPTLEIESGMNKSIHNNNFSSYSQDLSSCSIESDTFTRPSHSHAQDDVEAEMRRLKLELKQTMDMYSTACKEALNANRKATELHRWKVEEEQRFEEARMAEEAALAMAEREKMKCQAAIKAAEAAQKIAELEARKRENAERMADMEAEETKKALSGFGHGDIGYRKYTIEEIEIATNHFSNSLKIGEGGYGPVFRGKLDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMGNGSLEDCLFRKANNPVLSWQLRFRIAAEIATGLLFLHQHRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPLSVADSVTQYRMTATAGTFCYIDPEYQLTGLLGIQSDIYSLGVMLLQIVTGRPPIGLAHAVERAIQKGSFAEMLDPEVKDWPFEDALKFAKLSMKCTEMRKRDRPDLGKVVLPELNRLRAMAEESMGIRAFNGSSASSSPDTSQTSSSQEPMRIHQEQCGAWVESSSSQSNSSTSS 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4355648 4362328 - Cp4.1LG11g06610.1 Cpe11g00655 477449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00655 830 ProSiteProfiles Protein kinase domain profile. 506 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00655 830 Gene3D HUPs 22 172 IPR014729 -
Cpe11g00655 830 Gene3D Phosphorylase Kinase; domain 1 488 578 - -
Cpe11g00655 830 Pfam Universal stress protein family 23 147 IPR006016 -
Cpe11g00655 830 SUPERFAMILY Protein kinase-like (PK-like) 489 765 IPR011009 -
Cpe11g00655 830 MobiDBLite consensus disorder prediction 262 282 - -
Cpe11g00655 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Cpe11g00655 830 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 147 - -
Cpe11g00655 830 Coils Coil 372 392 - -
Cpe11g00655 830 Pfam Protein tyrosine and serine/threonine kinase 511 764 IPR001245 GO:0004672|GO:0006468
Cpe11g00655 830 PANTHER OS02G0152300 PROTEIN 21 803 - -
Cpe11g00655 830 Coils Coil 418 475 - -
Cpe11g00655 830 CDD STK_N 26 175 - -
Cpe11g00655 830 MobiDBLite consensus disorder prediction 785 830 - -
Cpe11g00655 830 MobiDBLite consensus disorder prediction 311 344 - -
Cpe11g00655 830 SMART serkin_6 506 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00655 830 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35-LIKE 21 803 - -
Cpe11g00655 830 Gene3D Transferase(Phosphotransferase) domain 1 579 786 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00655 - - - cmax:111492265 1095.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00217 Cpe11g00655 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00543 Cpe-Chr11:3218026 Cpe11g00655 Cpe-Chr11:4355648 0 dispersed
Cpe11g00655 Cpe-Chr11:4355648 Cpe12g00605 Cpe-Chr12:6036061 5.45E-21 dispersed
Cpe11g00655 Cpe-Chr11:4355648 Cpe07g00774 Cpe-Chr7:6846738 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g293 . Blo12g00755 . . Bpe02g01181 . Bma04g00407 . . Cmo12g00207 . Cma05g00733 . Car12g00238 . Cpe07g00217 . Bhi04g00845 . . . Hepe10g0363 . . . . . . . . . . . . . . . . Cme03g01742 . . Bda01g00936 . . Bpe04g00397 . . . . . . Cma12g00254 . Car05g00539 Cpe11g00655 . . . . . . . . Cla08g01224 Cam08g1683 Cec08g1262 Cco08g1382 Clacu08g1381 . Cre08g1166 Lsi08g01087 . Chy03g01247 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007310 0 2 2 2 1 0 2 0 0 1 1 0 2 1 0 2 0 1 2 0 1 1 1 1 0 2 1 1 0 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62714 PF07714 PK_Tyr_Ser-Thr 1.10E-37 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00655 Cpe_Chr11 FPKM 355.737793 368.974396 561.00238 539.577515 198.866638 217.414032 183.854675 629.171021 686.957336 588.569336