Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00664 | ATGGCATCCACCTCCTCCAATTCGCCCTGTGCTGCTTGCAAATTCCTCCGCCGTAAATGCCAACCGGAATGTGTTTTCGCGCCCTATTTCCCGCCGGATCAGCCTCAGAAATTCGCGAATGTTCATAAGGTATTTGGCGCTAGTAATGTCACTAAACTTCTCAACGAATTGCATCCTCACCAGCGCGAAGATGCTGTTAATTCTCTCGCTTATGAAGCCGATATGCGTCTCCGTGATCCTGTTTATGGCTGTGTTGGAGTAATTTCTCTGCTTCAACATCAACTCTGTAAACTCCAAATGGATCTCACTTCCGCTAAATCCGAACTCTCTAAGTATAAAACCCTAGGCATTGGGAACCCCGCCGCTCTGATTTCCTCGCCTTCTCCTCTTACTGCACAGCGGAACCACCAACCGACGTTTAATTTTGGTAGAGATCAACCTCATAGTCTCTGTTACGATCAATTTTTCCCTCGCGATCAACAACAACAACAACAACAGATGATGCTCCGACGAAGCTTCGACGGTGGTACTAACTACGACGGACTTTTGGCCGTCAATGTCACCGTCGTTATTTTCATTTCTTTCTAA | 588 | 46.77 | MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTSAKSELSKYKTLGIGNPAALISSPSPLTAQRNHQPTFNFGRDQPHSLCYDQFFPRDQQQQQQQMMLRRSFDGGTNYDGLLAVNVTVVIFISF | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4450407 | 4451997 | + | Cp4.1LG11g06540.1 | Cpe11g00664 | 477458 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00664 | 195 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Cpe11g00664 | 195 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - | |
Cpe11g00664 | 195 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 181 | - | - | |
Cpe11g00664 | 195 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 2 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g02332 | Cpe-Chr1:19603996 | Cpe11g00664 | Cpe-Chr11:4450407 | 2.70E-59 | dispersed | |
Cpe01g02505 | Cpe-Chr1:20588619 | Cpe11g00664 | Cpe-Chr11:4450407 | 3.50E-49 | dispersed | |
Cpe04g01574 | Cpe-Chr4:12321467 | Cpe11g00664 | Cpe-Chr11:4450407 | 3.05E-58 | dispersed | |
Cpe09g01010 | Cpe-Chr9:8933543 | Cpe11g00664 | Cpe-Chr11:4450407 | 5.45E-40 | dispersed | |
Cpe11g00664 | Cpe-Chr11:4450407 | Cpe16g00033 | Cpe-Chr16:429658 | 1.74E-59 | dispersed | |
Cpe11g00664 | Cpe-Chr11:4450407 | Cpe05g01077 | Cpe-Chr5:7130076 | 3.23E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50248 | PF03195 | LOB | 1.40E-43 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00664 | - | - | csv:101203281 | 320.857 |