Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00664 ATGGCATCCACCTCCTCCAATTCGCCCTGTGCTGCTTGCAAATTCCTCCGCCGTAAATGCCAACCGGAATGTGTTTTCGCGCCCTATTTCCCGCCGGATCAGCCTCAGAAATTCGCGAATGTTCATAAGGTATTTGGCGCTAGTAATGTCACTAAACTTCTCAACGAATTGCATCCTCACCAGCGCGAAGATGCTGTTAATTCTCTCGCTTATGAAGCCGATATGCGTCTCCGTGATCCTGTTTATGGCTGTGTTGGAGTAATTTCTCTGCTTCAACATCAACTCTGTAAACTCCAAATGGATCTCACTTCCGCTAAATCCGAACTCTCTAAGTATAAAACCCTAGGCATTGGGAACCCCGCCGCTCTGATTTCCTCGCCTTCTCCTCTTACTGCACAGCGGAACCACCAACCGACGTTTAATTTTGGTAGAGATCAACCTCATAGTCTCTGTTACGATCAATTTTTCCCTCGCGATCAACAACAACAACAACAACAGATGATGCTCCGACGAAGCTTCGACGGTGGTACTAACTACGACGGACTTTTGGCCGTCAATGTCACCGTCGTTATTTTCATTTCTTTCTAA 588 46.77 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTSAKSELSKYKTLGIGNPAALISSPSPLTAQRNHQPTFNFGRDQPHSLCYDQFFPRDQQQQQQQMMLRRSFDGGTNYDGLLAVNVTVVIFISF 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4450407 4451997 + Cp4.1LG11g06540.1 Cpe11g00664 477458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00664 195 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cpe11g00664 195 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cpe11g00664 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 181 - -
Cpe11g00664 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 2 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02332 Cpe-Chr1:19603996 Cpe11g00664 Cpe-Chr11:4450407 2.70E-59 dispersed
Cpe01g02505 Cpe-Chr1:20588619 Cpe11g00664 Cpe-Chr11:4450407 3.50E-49 dispersed
Cpe04g01574 Cpe-Chr4:12321467 Cpe11g00664 Cpe-Chr11:4450407 3.05E-58 dispersed
Cpe09g01010 Cpe-Chr9:8933543 Cpe11g00664 Cpe-Chr11:4450407 5.45E-40 dispersed
Cpe11g00664 Cpe-Chr11:4450407 Cpe16g00033 Cpe-Chr16:429658 1.74E-59 dispersed
Cpe11g00664 Cpe-Chr11:4450407 Cpe05g01077 Cpe-Chr5:7130076 3.23E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50248 PF03195 LOB 1.40E-43 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00664 - - csv:101203281 320.857