Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00707 | ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTCAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGTTATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAAAATGCAGCAGTCTGAAGCCAATGCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGGTAAAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACACGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGCTGCAGGAGCAAATAGAGGTACAAAGGCATTTACAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGAGTGTTGAGAAAGGCAGAAGAGACAATTGCAGGGTACGGTTGTTGTTCAGAAGCACTGGAAGAGCTCTCTCAATTGGCTTCAATGGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAGAAAGTAATGAGAATAATCAAGAGGAGTTCAGAATGGTCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGAAGTGGAAGTGGAAGTGGATTTGGATCAGAGTTGATCGAGTTTCTTTGA | 750 | 43.87 | MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYHLKSHLQKFRLGKMQQSEANAQLKLEDLKQMQVKGGKLDVENSDVGQNHNTKERKKIWDVMEMQMEVEKRLQEQIEVQRHLQLRIEAQGKYLKRVLRKAEETIAGYGCCSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQESNENNQEEFRMVDLNDAATGSGSGSGSGSGFGSELIEFL | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5160744 | 5162203 | + | Cp4.1LG11g07180.1 | Cpe11g00707 | 477501 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00707 | 249 | Coils | Coil | 70 | 93 | - | - | |
Cpe11g00707 | 249 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL8 | 4 | 206 | - | - | |
Cpe11g00707 | 249 | Pfam | Myb-like DNA-binding domain | 18 | 67 | IPR001005 | - | |
Cpe11g00707 | 249 | Pfam | MYB-CC type transfactor, LHEQLE motif | 118 | 160 | IPR025756 | - | |
Cpe11g00707 | 249 | Gene3D | - | 15 | 74 | - | - | |
Cpe11g00707 | 249 | SUPERFAMILY | Homeodomain-like | 15 | 70 | IPR009057 | - | |
Cpe11g00707 | 249 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 16 | 71 | IPR006447 | GO:0003677 | |
Cpe11g00707 | 249 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 4 | 206 | IPR044848 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00707 | Cpe-Chr11:5160744 | Cpe15g00910 | Cpe-Chr15:8713480 | 7.75E-51 | dispersed | |
Cpe11g00707 | Cpe-Chr11:5160744 | Cpe02g01347 | Cpe-Chr2:11918335 | 4.07E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50253 | PF14379 | Myb_CC_LHEQLE | 2.00E-18 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00707 | - | - | cmos:111450554 | 424.091 |