Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00707 ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTCAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGTTATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAAAATGCAGCAGTCTGAAGCCAATGCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGGTAAAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACACGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGCTGCAGGAGCAAATAGAGGTACAAAGGCATTTACAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGAGTGTTGAGAAAGGCAGAAGAGACAATTGCAGGGTACGGTTGTTGTTCAGAAGCACTGGAAGAGCTCTCTCAATTGGCTTCAATGGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAGAAAGTAATGAGAATAATCAAGAGGAGTTCAGAATGGTCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGAAGTGGAAGTGGAAGTGGATTTGGATCAGAGTTGATCGAGTTTCTTTGA 750 43.87 MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYHLKSHLQKFRLGKMQQSEANAQLKLEDLKQMQVKGGKLDVENSDVGQNHNTKERKKIWDVMEMQMEVEKRLQEQIEVQRHLQLRIEAQGKYLKRVLRKAEETIAGYGCCSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQESNENNQEEFRMVDLNDAATGSGSGSGSGSGFGSELIEFL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5160744 5162203 + Cp4.1LG11g07180.1 Cpe11g00707 477501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00707 249 Coils Coil 70 93 - -
Cpe11g00707 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 4 206 - -
Cpe11g00707 249 Pfam Myb-like DNA-binding domain 18 67 IPR001005 -
Cpe11g00707 249 Pfam MYB-CC type transfactor, LHEQLE motif 118 160 IPR025756 -
Cpe11g00707 249 Gene3D - 15 74 - -
Cpe11g00707 249 SUPERFAMILY Homeodomain-like 15 70 IPR009057 -
Cpe11g00707 249 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Cpe11g00707 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 206 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00707 - - - cmos:111450554 424.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00707 Cpe-Chr11:5160744 Cpe15g00910 Cpe-Chr15:8713480 7.75E-51 dispersed
Cpe11g00707 Cpe-Chr11:5160744 Cpe02g01347 Cpe-Chr2:11918335 4.07E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50253 PF14379 Myb_CC_LHEQLE 2.00E-18 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00707 Cpe_Chr11 FPKM 16.880865 18.483189 63.214272 66.869743 2.009914 1.479451 1.774342 195.364868 188.392303 184.760483