Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00707 ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTCAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGTTATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAAAATGCAGCAGTCTGAAGCCAATGCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGGTAAAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACACGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGCTGCAGGAGCAAATAGAGGTACAAAGGCATTTACAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGAGTGTTGAGAAAGGCAGAAGAGACAATTGCAGGGTACGGTTGTTGTTCAGAAGCACTGGAAGAGCTCTCTCAATTGGCTTCAATGGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAGAAAGTAATGAGAATAATCAAGAGGAGTTCAGAATGGTCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGAAGTGGAAGTGGAAGTGGATTTGGATCAGAGTTGATCGAGTTTCTTTGA 750 43.87 MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYHLKSHLQKFRLGKMQQSEANAQLKLEDLKQMQVKGGKLDVENSDVGQNHNTKERKKIWDVMEMQMEVEKRLQEQIEVQRHLQLRIEAQGKYLKRVLRKAEETIAGYGCCSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQESNENNQEEFRMVDLNDAATGSGSGSGSGSGFGSELIEFL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5160744 5162203 + Cp4.1LG11g07180.1 Cpe11g00707 477501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00707 249 Coils Coil 70 93 - -
Cpe11g00707 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 4 206 - -
Cpe11g00707 249 Pfam Myb-like DNA-binding domain 18 67 IPR001005 -
Cpe11g00707 249 Pfam MYB-CC type transfactor, LHEQLE motif 118 160 IPR025756 -
Cpe11g00707 249 Gene3D - 15 74 - -
Cpe11g00707 249 SUPERFAMILY Homeodomain-like 15 70 IPR009057 -
Cpe11g00707 249 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Cpe11g00707 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 206 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00707 Cpe-Chr11:5160744 Cpe15g00910 Cpe-Chr15:8713480 7.75E-51 dispersed
Cpe11g00707 Cpe-Chr11:5160744 Cpe02g01347 Cpe-Chr2:11918335 4.07E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50253 PF14379 Myb_CC_LHEQLE 2.00E-18 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00707 - - cmos:111450554 424.091