Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00728 ATGGCTTCAATCAACTGGTTGGGTTTCTCCCTCTCCCCCCAACATCACCAACACCAACTCCCCCACCACCCTCACGCCGTCTCCGCCGCTGCCTTCACCACCGACCAAATCTCCGCCTCTGACGTCCCCGCCGTCTGCTTTGACAACCTTCCTTCCTCCTATGGCGTCTATGACTCTCAAGATTGGAATAGTGTGAAGGGTTTAGGGCAGACTCAAAGTTCGGATTTTTCTGGTTTAATCGACACCCATCACCAACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGCCGTCGTCTACACCAATGCATCCGCCAACTACATCTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGCCAAACGGCGGAAGCGGTGACGGCGGTGGAAGACCCAACCCCAGTAACGGCAACGGCAACGGCAACGGCAACTATACTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAACCAACCGGCGCCGCCGCAAGCGGTGGCTAAAAGCGGCGGAGATCACGACGGAGCAATAGGAAAACCTAATATCACAAACCCACATACTTTATCGCTGTCGATGAACACCGGGCCACCACCACCACCACCACCGTCGCAGTCCTCCGACTTGGAAGCTCTACCACTTCTCATAACAAACGGCGGCGAAAGCTCCTCCTCTAATAAGAAACAACCCAAATCATCCGCTACTGAGGTAGACACTGATAACGGCCCCATTGAAGCTGTCCCAAGAAAATCCATGGACACATTTGGACAAAGAACATCCATCTACCGCGGAGTAACCAGACATAGATGGACAGGAAGATACGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACCAGAAAAGGAAGACAAGGAGGTTATGACAAAGAACAAAAGGCTGCTAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACTACCACCACCAACTTTCCAAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCATCAGCACGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGAAATAAAGATCTTTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCGGAGGCATACGACATAGCCGCCATAAAGTTTCGAGGACTAAATGCCGTGACCAACTTCGACATGACTCGTTATGATGTCAAAGCCATTCTCGAAAGTAACACATTGCCTATTGGTGGCGCTGCGAAGCGCTTAAAAGATATTGACCACTCTGACATTCCTCTACATCCTCAATCAACTGATGAAAACATATCATCGCATTTATCTAATGGAATAATTACTTCCGGGGGCGGTGGATGGCCAACTCTCGCCTTCCACCACCACCACCCCTACGCCTCTCACTACCCTTATGGTGCACTACAGCAACGGCTGTGGTGCAAGCAAGAGAACGATGTCAGTGCCGGGAACTTCTTGGACTCGATGGACCAGAGCTCTGGGTCGAGCTCGGTGGTTTATAGTAGAGATGGGTACGGTGGGAACTTCGTGATTCCGATGGGAGCGGAAGGGGGTGGATTGGGAGACATTGGAGAAGTGAATATGTTTGGTGGTGGTTGTAACGTGGATGATCCATTCCATGCAACAAGAACGAGCAATTTGTATAATTATAATAATTCCTCCCATCAGCTGCAACAACCACCGCCGGAGCTGCAAGGCTCCTCCGGCAACAACTGGCTTCCGCCAGCCAGGTCGGTTTGTCACGGCGGAACTCCGCCGCCTTTCACCATTTGGAATGACACT 1818 50.88 MASINWLGFSLSPQHHQHQLPHHPHAVSAAAFTTDQISASDVPAVCFDNLPSSYGVYDSQDWNSVKGLGQTQSSDFSGLIDTHHQPKLENFLGHHSFTDHDHAAAAVVYTNASANYIFQNCSLELPSEPNGGSGDGGGRPNPSNGNGNGNGNYTSSIGLSMIKTWLRNQPAPPQAVAKSGGDHDGAIGKPNITNPHTLSLSMNTGPPPPPPPSQSSDLEALPLLITNGGESSSSNKKQPKSSATEVDTDNGPIEAVPRKSMDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEQKAARAYDLAALKYWGTTTTTNFPSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLHPQSTDENISSHLSNGIITSGGGGWPTLAFHHHHPYASHYPYGALQQRLWCKQENDVSAGNFLDSMDQSSGSSSVVYSRDGYGGNFVIPMGAEGGGLGDIGEVNMFGGGCNVDDPFHATRTSNLYNYNNSSHQLQQPPPELQGSSGNNWLPPARSVCHGGTPPPFTIWNDT 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5567673 5570695 + Cp4.1LG11g07010.1 Cpe11g00728 477522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00728 606 Gene3D AP2/ERF domain 343 403 IPR036955 GO:0003700|GO:0006355
Cpe11g00728 606 Gene3D AP2/ERF domain 270 334 IPR036955 GO:0003700|GO:0006355
Cpe11g00728 606 MobiDBLite consensus disorder prediction 170 261 - -
Cpe11g00728 606 ProSiteProfiles AP2/ERF domain profile. 270 333 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 334 493 - -
Cpe11g00728 606 MobiDBLite consensus disorder prediction 202 216 - -
Cpe11g00728 606 MobiDBLite consensus disorder prediction 137 154 - -
Cpe11g00728 606 CDD AP2 342 401 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 SUPERFAMILY DNA-binding domain 269 334 IPR016177 GO:0003677
Cpe11g00728 606 CDD AP2 269 335 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 PANTHER BNAC02G44180D PROTEIN 5 333 - -
Cpe11g00728 606 SUPERFAMILY DNA-binding domain 342 402 IPR016177 GO:0003677
Cpe11g00728 606 Pfam AP2 domain 343 393 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 Pfam AP2 domain 270 325 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 ProSiteProfiles AP2/ERF domain profile. 343 401 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 PANTHER BNAC02G44180D PROTEIN 334 493 - -
Cpe11g00728 606 PRINTS Ethylene responsive element binding protein signature 383 403 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 PRINTS Ethylene responsive element binding protein signature 271 282 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 SMART rav1_2 343 407 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 SMART rav1_2 270 339 IPR001471 GO:0003700|GO:0006355
Cpe11g00728 606 MobiDBLite consensus disorder prediction 127 154 - -
Cpe11g00728 606 MobiDBLite consensus disorder prediction 562 583 - -
Cpe11g00728 606 MobiDBLite consensus disorder prediction 226 248 - -
Cpe11g00728 606 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00532 Cpe-Chr7:3517977 Cpe11g00728 Cpe-Chr11:5567673 9.01E-37 dispersed
Cpe07g00831 Cpe-Chr7:7531542 Cpe11g00728 Cpe-Chr11:5567673 0 dispersed
Cpe11g00728 Cpe-Chr11:5567673 Cpe16g00890 Cpe-Chr16:8370460 3.60E-108 dispersed
Cpe11g00728 Cpe-Chr11:5567673 Cpe02g01743 Cpe-Chr2:14248478 3.89E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50255 PF00847 AP2 8.30E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00728 K09285 - csv:101219473 868.996