Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00753 ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAG 711 48.24 MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANDANPRYGGDFEWSR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6021650 6025315 - Cp4.1LG11g07290.1 Cpe11g00753 477547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00753 236 Gene3D Transcriptional Coactivator Pc4; Chain A 168 223 IPR009044 GO:0003677|GO:0006355
Cpe11g00753 236 Gene3D Transcriptional Coactivator Pc4; Chain A 81 167 IPR009044 GO:0003677|GO:0006355
Cpe11g00753 236 MobiDBLite consensus disorder prediction 216 236 - -
Cpe11g00753 236 Pfam Whirly transcription factor 95 168 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cpe11g00753 236 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 168 236 - -
Cpe11g00753 236 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 69 167 - -
Cpe11g00753 236 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 236 IPR009044 GO:0003677|GO:0006355
Cpe11g00753 236 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 69 167 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cpe11g00753 236 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 168 236 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00983 Cpe-Chr2:8879837 Cpe11g00753 Cpe-Chr11:6021650 4.18E-31 dispersed
Cpe11g00753 Cpe-Chr11:6021650 Cpe07g00617 Cpe-Chr7:4277112 3.74E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50258 PF08536 Whirly 8.70E-30 CL0609 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00753 - - csv:101203474 368.622