Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00763 ATGTCTACCTCTAGACCTAGTCAGTCTTCTAGCAACTCTGGGCGGTCCAGACATAGCACTAGAATTATTGCTCAGACATCTGTTGATGCGAAGCTGCAAGCTGATTTTGAGGAATCTGGGAATTCGTTTGACTACTCAAGTTCAGTGCGTGTCACTAGTGATGTTAGCGGAGATCAACAGCCTAGGTCAGACAAAGTTACTACAGCTTATCTCCATCATATTCAGAAAGGCAAACTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGCACAGATGTAAGGACTATTTTCACCGCACCTAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGAGAGGTTACACTTCTTAATCCTATCCTGGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTTCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGGTCCAGTGACTGCAGCTGGAGCTCTACAATCATATAAACTTGCCGCCAAAGCGATTACTAGATTGCAGTCTTTGCCTAGTGGAAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATCGAGTTATGGCTTATAAATTCCATGATGATGATCATGGGGAAGTGATCTCTGAAGTCGCAAAGCCCGGCCTTCAGCCATATCTTGGTTTGCATTATCCAGCAACTGACATTCCTCAAGCTGCACGTTTTTTGTTCATGAAAAATAAGGTCCGGATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGTGGTTCAACTTTAAGAGCTCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATAGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGAAAATGAAGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGCTTGGTAGTATGTCATAATTCAAGTCCCAGATTTGTTCCGTTTCCTCTTAGGTATGCTTGTGAGTTCCTAGCTCAAGTATTTGCTATTCATGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAGAATATTCTGCGTACGCAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCGAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAAAAAAATTTGGCGATTAGGATTGACACCTAATGACTTCCAGTTGCTGGACATAGCTTCGTGGCTTTCCGAGTATCATATGGATTCAACGGGGTTGAGTACTGACAGTTTGTATGATGCAGGATACCCTGGAGCTATTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGACATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTCAAAAGGATGATGCCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCCTGGAAGGACTATGAGATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTTAAGGATACAGATGCAACTGAAATAAATAGAAAATCAATTCAAACAACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCCGATTAATCGAGACAGCTACTGTGCCGATTTTAGCTGTTGATTTAGATGGGTTAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTGCCTGTGGATAAAGCTATCGGCAAGCATTTACTTACGTTAGTGGAAGATTCATCTGTAGAAGTTGTCAGGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTCGAGATCAAGACACACGGTTCTCACATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTCGTGGGTGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTAATGGACAAGTTCACTCGATTAGAAGGCGATTACAAAGCCATTGTACAAAATCCCAATCCATTGATCCCTCCAATATTTGGATCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGGCGAAACTAACTGGGTGGTCACGTGAAGAAGTAATCGATAAGATGCTTTTGGGAGAGGTTTTTGGTGTTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGATTGTCTTGAACAATGCCATGTGTGGTCAAGATCCTGAAAAGGCTTCCTTTGGTTTCTTAGCTCGGAACGGGATGTACGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAAAGATGGCGCGGTTACAGGGTTCTTTTGCTTTTTGCAGCTTCCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGCTTATGTGAGCAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGACAGATACAAAATCCTCTTTCTGGGATAATCTTTTCACGAAGATTATTGGAGCGCACCGAGTTGGGAGTAGAACAAAAAGAACTTCTGCGTACTAGCGGACTCTGTCAAAAGCAGATCTCCAAGGTTCTCGATGAGTCAGACATCGATAAAATTATTGATGGGTTTATTGATTTAGAAATGGACGAGTTTACATTGCATGAAGTATTGATGGTATCAATTAGTCAAGTGATGCTAAAGATTAAAGGAAAGGGTATCCAGATAGTTAATGAGACTCCAGAAGAGGCTATGTCCGAGACCTTATATGGAGATAGTTTAAGGCTTCAACAGGTCTTGGCGGACTTTCTATTGATATCAGTTAGTTATGCGCCTTCAGGAGGCCAACTAACAATTTCAACCGATGTGACCAAGAATCAATTAGGAAAGTCGGTCCATCTGGTGCATTTGGAGTTCAGGATAACATATGCTGGAGGAGGTATACCGGAGTCGTTGCTGAACGAGATGTTTGGAAGCGAGGAGGACGCGTCCGAAGAGGGTTTCAGTCTGCTCATCAGTAGAAAGCTGGTGAAGCTGATGAATGGAGACGTACGATATATGAGGGAAGCCGGGAAGTCGAGCTTCATCATAACTGTTGAGCTTGCTGCAGCTCACAAGTCAAGGACAACGTAG 3375 41.84 MSTSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEGPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVAKPGLQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEENEGPALQQQKRKRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKKKIWRLGLTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVNKILDKDGAVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGVEQKELLRTSGLCQKQISKVLDESDIDKIIDGFIDLEMDEFTLHEVLMVSISQVMLKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLADFLLISVSYAPSGGQLTISTDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRTT 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6110050 6116390 - Cp4.1LG11g07630.1 Cpe11g00763 477557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00763 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Cpe11g00763 1124 SUPERFAMILY GAF domain-like 198 397 - -
Cpe11g00763 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Cpe11g00763 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Cpe11g00763 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Cpe11g00763 1124 MobiDBLite consensus disorder prediction 39 64 - -
Cpe11g00763 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355
Cpe11g00763 1124 SMART HisKA_10 893 954 IPR003661 GO:0000155|GO:0007165
Cpe11g00763 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Cpe11g00763 1124 SMART gaf_1 218 410 IPR003018 GO:0005515
Cpe11g00763 1124 Gene3D PAS domain 74 321 - -
Cpe11g00763 1124 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Cpe11g00763 1124 SMART pas_2 748 817 IPR000014 -
Cpe11g00763 1124 SMART pas_2 618 684 IPR000014 -
Cpe11g00763 1124 Gene3D - 961 1123 IPR036890 -
Cpe11g00763 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Cpe11g00763 1124 Pfam GAF domain 219 400 IPR003018 GO:0005515
Cpe11g00763 1124 Gene3D - 405 578 IPR043150 -
Cpe11g00763 1124 Gene3D PAS domain 763 875 - -
Cpe11g00763 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Cpe11g00763 1124 SMART HKATPase_4 1005 1117 IPR003594 -
Cpe11g00763 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Cpe11g00763 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1112 IPR036890 -
Cpe11g00763 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Cpe11g00763 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1119 - -
Cpe11g00763 1124 MobiDBLite consensus disorder prediction 1 24 - -
Cpe11g00763 1124 ProSiteProfiles Histidine kinase domain profile. 900 1119 IPR005467 -
Cpe11g00763 1124 Coils Coil 397 417 - -
Cpe11g00763 1124 SUPERFAMILY GAF domain-like 408 585 - -
Cpe11g00763 1124 CDD PAS 627 733 IPR000014 -
Cpe11g00763 1124 Gene3D PAS domain 611 748 - -
Cpe11g00763 1124 CDD PAS 760 871 IPR000014 -
Cpe11g00763 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe11g00763 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Cpe11g00763 1124 Gene3D - 199 561 IPR029016 -
Cpe11g00763 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355
Cpe11g00763 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355
Cpe11g00763 1124 TIGRFAM sensory_box: PAS domain S-box protein 623 739 IPR000014 -
Cpe11g00763 1124 PANTHER PHYTOCHROME A 1 1119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00763 K12120 PHYA; phytochrome A - csv:101208491 2078.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00763 Cpe-Chr11:6110050 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe11g00763 Cpe-Chr11:6110050 0 transposed
Cpe11g00763 Cpe-Chr11:6110050 Cpe07g00609 Cpe-Chr7:4182080 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00763 Cpe_Chr11 FPKM 0.0 0.0 1.129036 0.540706 1.53621 1.61926 1.714653 0.0 0.193291 0.0