Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00774 ATGTCGGGATCTGAAGGTGGTGTGATGACCAGTAGAGACTCCTTCAATGTCGCCGTTCAAAATAGTTCGTTACAGTCGCAGCCGGCGGCCCAAAATATGCGATTATCCTTCAGTGCCGATGGCACAGCCGTCTACAAACCTGTGACTGTGACTCCGACTCCGACACCTTCAACTTTACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGTAAGGAGGGATCGGCTGGTGGTGGGTCGATACTGCCTCATGATTTGAATATAAACTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGAGGAAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTGGGTTCTGGGCAGCCATCAAGAAGTGGAGCTTCTGAAGGAGGATTGGGCTCACCAAATTCATTGAAAAAAAGTAAAGGCAGGCCATCTGGTTCTAAGAAAAAGCGACAATTGGAAGCTTTGGCTTTGTTGAAAACTGAGTTTCTTATAGAGGAATCAATTGCAGGACCGGCTGGTTTTGGATTCACTCCACATGTTATCGATGTGAAAGCTGGAGAGGTGGTAGTGGGAAGTTTCATAGCCGACAGCAATAAGGAACCAAAGCCATCCCGCCAAACTGAACCCACAACAGCCTCGCCAATGCTAAACCAAGTCGCCTTTGGTCACTTGACCGGAGGAGCCAGTAGTCCATCGCACGGGACGCTGAGCGAGTCTTCCGGTGGTGGACCTGGCAGCCCCCTCAACAACAGCTCAGGAGCCTGCAACAACAGCATCCATCCACAGACAATGTCCGGCATGCCATGGAAGTAA 825 50.79 MSGSEGGVMTSRDSFNVAVQNSSLQSQPAAQNMRLSFSADGTAVYKPVTVTPTPTPSTLPSYQSSMAGVSGNAGKEGSAGGGSILPHDLNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGQPSRSGASEGGLGSPNSLKKSKGRPSGSKKKRQLEALALLKTEFLIEESIAGPAGFGFTPHVIDVKAGEVVVGSFIADSNKEPKPSRQTEPTTASPMLNQVAFGHLTGGASSPSHGTLSESSGGGPGSPLNNSSGACNNSIHPQTMSGMPWK 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6264454 6268561 + Cp4.1LG11g07770.1 Cpe11g00774 477568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00774 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 192 271 IPR039605 GO:0003680
Cpe11g00774 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 193 IPR039605 GO:0003680
Cpe11g00774 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 193 - -
Cpe11g00774 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 192 271 - -
Cpe11g00774 274 MobiDBLite consensus disorder prediction 226 268 - -
Cpe11g00774 274 MobiDBLite consensus disorder prediction 226 274 - -
Cpe11g00774 274 MobiDBLite consensus disorder prediction 48 71 - -
Cpe11g00774 274 MobiDBLite consensus disorder prediction 48 153 - -
Cpe11g00774 274 MobiDBLite consensus disorder prediction 120 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00774 - - - cmax:111496396 231.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00602 Cpe11g00774 CCT
Cpe02g00014 Cpe11g00774 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00774 Cpe-Chr11:6264454 Cpe14g00956 Cpe-Chr14:8067717 1.98E-20 dispersed
Cpe17g00356 Cpe-Chr17:2538906 Cpe11g00774 Cpe-Chr11:6264454 5.84E-12 dispersed
Cpe11g00774 Cpe-Chr11:6264454 Cpe02g00014 Cpe-Chr2:94801 1.24E-53 wgd
Cpe11g00774 Cpe-Chr11:6264454 Cpe06g00002 Cpe-Chr6:8625 1.22E-17 wgd
Cpe11g00774 Cpe-Chr11:6264454 Cpe07g00602 Cpe-Chr7:4043733 3.52E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g47 . . . . . . . . Cmo05g00982 Cmo12g00629 Cma01g02039 . Car01g01608 . . . Cpe07g00602 Bhi04g01204 . . . Hepe08g1523 . . Cla08g00927 Cam08g1372 Cec08g0955 Cco08g1074 Clacu08g1080 . Cre08g0864 . . Cone17ag1478 . Lsi04g02421 Csa04g02738 . Cme03g01327 Blo17g00908 . . . . . . . . Cmo01g02098 . Cma12g00694 Cma05g00961 Car05g00844 . Cpe11g00774 Cpe02g00014 Bhi09g02829 . . . . Mch11g0030 . Cla11g01851 Cam11g1917 Cec11g1942 Cco11g1956 Clacu11g2082 Cmu11g1886 Cre11g2294 Lsi08g00770 . Chy07g00425 Cme07g00024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002543 0 3 1 0 0 1 3 1 1 2 2 2 3 2 2 3 1 1 3 2 2 2 2 2 2 2 2 5 3 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00774 Cpe_Chr11 FPKM 36.856956 41.348961 83.490013 80.892601 240.302994 256.318115 238.633774 112.758018 110.491982 106.536926