Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00782 ATGGCTGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCTTTTCAGATGAGAGCGGTTTTTACGCGAGATTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTTTAACGAAGAAAGTAATGCGGGATCCTGTTACTATAGAAAGTGGGCAAACTTTTGAACGTGCGGCCATTGAGATGTGGTTCAACGAATGCAGGGAGAGTAGAAGGAAGCCAATCTGTCCAATGACACTAAAAGAATTAAGAACCACGGATCTGAATCCGAGTATTGCTCTGCGAAATACTATTGAAGAGTGGACTGCGAGGAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAATGAAACATTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCGAGGCACATCGCACGAAATGCGGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAGAGTTCAGTTTAGAGCTTTGGAAACGCTTAAAATTGTGGTGCAAGAAGACAATGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCGCACGGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAAAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCACGTCCCAAGACTTGTGTGAAAAGATTGGTTCTGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCAAGCAGCAGATCTGAGAACGTCACCACAGTTGAAAATGCTGAGAGAACATTAGAGAATCTGCAGACATGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCCCCAGAAACTAAACATTCTATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGACGACAAACTCTTTGTGGCTCAGACCGTGGGGTCGTCGCTAATTAATATCATGAGAAGTGGTGATAAGCAGGCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATTTCGTCTTTTGAGGCTAGTGCACGAGTTTTGGTACAGCAAGGGATACTGCCACCTCTCGTTCGGGATCTTTTCGCAGTTGGTTCGAACCCACTTCCCATGAAACTAAAAGAAGTATCTGCTACAATTCTTGCCAATATTGTTAGCTCAGGAAGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACCACACTTGTCTCTGAAGCTACTATACATAGCCTGCTACAACTCATTAGCAATACCGGTCCAGCCATTGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACTATTTCGAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAATAATCAGCTTGGTTCAATTTATCGAGGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCGCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACAGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTCTCCCGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCCACCTTAGAATTTTTCAACTCCGCCAAGGGGGGACTAGGGGAGGCCGATTTTTAACACCATTCCTCGAAGGCCTTGTTCGAATTCTTGCGAGGATTACGTTTATACTGGCTGATGAACCTGATGCTGTTGCATTTTGTCGCAACCGCGATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTTTAGAATCTAAAACTTTGACTCAGTTACCTACGCTTCCAGAACCGGGATTTTGTGCCTCAATTTTCCCATGCTTCAGCTCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACATGCTCTTTGAAGGAAACTTTTTGTCTTTTGGAAGGTAATGCAGTCGACAAATTGGTAGCCCTTTTAGATCACGCAAGTGAGAAGGTCGTCGAGGCAGCACTTGCAGCACTATCTACTTTGTTGGATGATGGGGTCGACGTCGAGAAGGGCGTGAACATTTTACACAATGTAGATGGGGTTCAGCCTATATTTAACGTGTTGTTTGAAAACCGCTCAGAGAATCTGATGAGACGGGCAGTTTGGACAGCCGAGAGGCTGTTGCGCAACGATGACATCGCTATCGAATTCTCGAACAATCCAAACGTGAATACAGCGCTTGTCGATGCCTTCCAGCATGGTGACTACAAAACAAGGCAAATCGCTGAGCGTGCCTTGAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTGGATTGCTTGTTCATGGATTTGTACTTCGTTTCTTGATCTGCTTGCCTAAAATTCAGCGTCGTTACAAGTCCTCGTTCAATAAGCTTAAGGAT 2532 44.39 MAESWDGSYDDSGSFSDESGFYARLHIEPIYDSFLCPLTKKVMRDPVTIESGQTFERAAIEMWFNECRESRRKPICPMTLKELRTTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRRVQFRALETLKIVVQEDNECKEMLAEGDTLRTVVKFLRHERSKEKEEAVALLYELSTSQDLCEKIGSVNGAILILVGMSSSRSENVTTVENAERTLENLQTCENNIRQMAEYGRLRPLLTQILEGPPETKHSMAAHLGELVLNNDDKLFVAQTVGSSLINIMRSGDKQAKEAALKALNQISSFEASARVLVQQGILPPLVRDLFAVGSNPLPMKLKEVSATILANIVSSGSDFNSIPVEPNNQTTLVSEATIHSLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAIISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEGAFELVHLRIFQLRQGGTRGGRFLTPFLEGLVRILARITFILADEPDAVAFCRNRDLAALFIELLQSNGLDNVQMVSAMALENLSLESKTLTQLPTLPEPGFCASIFPCFSSQPVLTGLCPLHRGTCSLKETFCLLEGNAVDKLVALLDHASEKVVEAALAALSTLLDDGVDVEKGVNILHNVDGVQPIFNVLFENRSENLMRRAVWTAERLLRNDDIAIEFSNNPNVNTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPGLLVHGFVLRFLICLPKIQRRYKSSFNKLKD 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6327751 6340140 - Cp4.1LG11g07790.1 Cpe11g00782 477576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00782 844 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 812 - -
Cpe11g00782 844 CDD RING-Ubox_PUB 34 79 IPR045210 -
Cpe11g00782 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 115 IPR013083 -
Cpe11g00782 844 SUPERFAMILY RING/U-box 24 111 - -
Cpe11g00782 844 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Cpe11g00782 844 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Cpe11g00782 844 Pfam Armadillo/beta-catenin-like repeat 685 712 IPR000225 GO:0005515
Cpe11g00782 844 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Cpe11g00782 844 SUPERFAMILY ARM repeat 130 445 IPR016024 -
Cpe11g00782 844 Gene3D - 575 816 IPR011989 -
Cpe11g00782 844 Coils Coil 253 273 - -
Cpe11g00782 844 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 812 - -
Cpe11g00782 844 Gene3D - 116 536 IPR011989 -
Cpe11g00782 844 SMART arm_5 181 221 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 673 714 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 448 488 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 347 392 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 307 346 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 139 179 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 266 306 IPR000225 GO:0005515
Cpe11g00782 844 SMART arm_5 222 265 IPR000225 GO:0005515
Cpe11g00782 844 SUPERFAMILY ARM repeat 416 802 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00244 Cpe-Chr9:1408280 Cpe11g00782 Cpe-Chr11:6327751 8.68E-123 dispersed
Cpe09g00433 Cpe-Chr9:2765324 Cpe11g00782 Cpe-Chr11:6327751 6.02E-28 dispersed
Cpe11g00782 Cpe-Chr11:6327751 Cpe02g01239 Cpe-Chr2:11139117 1.69E-19 dispersed
Cpe11g00782 Cpe-Chr11:6327751 Cpe01g01217 Cpe-Chr1:7263712 8.14E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00782 - - csv:101217370 1408.28