Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00786 ATGAAGCCCATCCCATCGCTAAGCCTCGAAGCAAGCTCCGAGCCTCCCTCCATGGGCAACCTCTGCGGCACTCCCGTCGACGCCCACTCCCTCCCTCCGACCAAGCCTTCCTCCCCCGGCCACCTCACATCTACACCACGCGCCTCCTCCACGCCGCTCGATCTTAAAGTTTACACTCTCTCGGAGCTGAAGACGGCCACCAAGAATTTCCGCCCCGACACGCTGCTCGGAGAGGGCGGATTTGGGCGGGTCTTCAAAGGCTGGGTCGATAGGGAAACCTACGCGCCGTCTAAGGTCGGCGTTGGCATCCCCGTCGCGGTCAAAAAGTCAAATCCCGACAGCTCTCAAGGCCTCCGGGAATGGAAGGCTGAGGTGGAATTCTTGGGGAAATTTACCCATCCAAATGTCGTGAAATTAATCGGCTATTGCTGGGAGGACAAGCACTTTCTCCTTGCTTATGAGTACATGGAGAGGGGTAGTTTGGAGAATCACTTATTTCGAAGTGTACAGCCACCGTCATGGGAAACGCGGATTAAAATAGCGGTGGGGGCGGCGCGTGGATTGACGTTCCTCCATACGTCGGAGAAGAGCGTGATTTACCGCGACTTCAAAGCGGCTAATATTCTCCTGGACTGGGATTTTAACCCAAAATTGTCGGATTTTGGGCTGGCGAAACTGGGCCCATCGAATGGTTACTCCCACGTCAGCACGGATCCAGTGGGCACCTGCGGCTACGCTGCCCCTGAGTACATTGCTAGTGGTATTATTTACCTTCCTTCTCCTCTTTTTTTTTTCAAAATGACTTTAATACCCCTGAACTTTTTAGTAAATTCCAAATAG 840 53.45 MKPIPSLSLEASSEPPSMGNLCGTPVDAHSLPPTKPSSPGHLTSTPRASSTPLDLKVYTLSELKTATKNFRPDTLLGEGGFGRVFKGWVDRETYAPSKVGVGIPVAVKKSNPDSSQGLREWKAEVEFLGKFTHPNVVKLIGYCWEDKHFLLAYEYMERGSLENHLFRSVQPPSWETRIKIAVGAARGLTFLHTSEKSVIYRDFKAANILLDWDFNPKLSDFGLAKLGPSNGYSHVSTDPVGTCGYAAPEYIASGIIYLPSPLFFFKMTLIPLNFLVNSK 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6375438 6376721 + Cp4.1LG11g07890.1 Cpe11g00786 477580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00786 279 PANTHER OS01G0588500 PROTEIN-RELATED 46 269 - -
Cpe11g00786 279 Gene3D Phosphorylase Kinase; domain 1 54 155 - -
Cpe11g00786 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cpe11g00786 279 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Cpe11g00786 279 Pfam Protein tyrosine and serine/threonine kinase 74 269 IPR001245 GO:0004672|GO:0006468
Cpe11g00786 279 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 46 269 - -
Cpe11g00786 279 Gene3D Transferase(Phosphotransferase) domain 1 156 269 - -
Cpe11g00786 279 ProSiteProfiles Protein kinase domain profile. 70 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00786 279 SUPERFAMILY Protein kinase-like (PK-like) 46 254 IPR011009 -
Cpe11g00786 279 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00786 - - - cpep:111805209 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00786 Cpe-Chr11:6375438 Cpe04g00630 Cpe-Chr4:6523974 6.23E-94 dispersed
Cpe11g00786 Cpe-Chr11:6375438 Cpe07g00590 Cpe-Chr7:3954274 1.11E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62717 PF07714 PK_Tyr_Ser-Thr 2.20E-32 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00786 Cpe_Chr11 FPKM 177.967163 178.29393 140.29422 135.322037 151.048431 169.976349 146.980103 126.687737 118.516945 116.242096