Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00796 ATGTCTTCGTTGACTCTAAAACCCTCCTTTCCCACTTCTAAACTGTCATTTCTCTCATCATCTTCTTCATCTTCGTCTACTTTTCCTCGCTTCTCTCCAATTTCCTTTCCAAGGAAGCTGAGGTATGGTGTTGCGTTGCGCCTTCGTGCTTACAACTCTTCCAAGAGCGACAGTCCCGATGCCTCTTCTGGCGATTCTAAGCTTCCCAACGGTACTTTGCCAAAAACCCGGAGAGACATTCTGCTGGAATATGTTAAAAATGTCCAGCCAGAATTCATGGAATTATTTGTTCAGAGGGCACCACAACAGGTTGTTGAAGCTATGCGCCAAACAGTCACAAATATGATTGGAACTCTACCTCCGCAGTTTTTTGCAGTTACTGTCACCACAGTTGCTGAAAATCTTGCACAGCTCATGTACAGTGTAATGATGACGGGATATATGTTTAAAAACGCTCAATATCGCTTAGAACTGCAGCAAAGTTTAGAGCAGGTTGCTCTCCCAGAACCGAAGGAAGAAAAGGATGATTCGAATTATGCTGCTGGTACACAAAAGAATGTCACAGGTGAAGTTATCAGGTGGAATAATGTGTCTGGTCCCGAGAAAATTGATGCTAAAAGGTACATAGAATTACTTGAAGCAGAGATAGAGGAACTGAATCGTCAAGTAGGTAGAAAATCTTCACAAGGTCAAAATGAACTGTTGGAATATCTCAAAACACTTGAACCCCAAAATCTAAAGGAGTTATCAAGCAGCGCTGGTGAGGATGCTGTGGATGCAATGAATACATTCATAAAGCGCCTATTAGCGGCCTCAGATCCAACTCAAATGAAGACAAGTGTAACAGAGACAACAGCACCAGAGCTGGCGAAGCTTCTGTATTGGCTAATGGTGGTTGGCTACGGCATTCGCAACATCGAAGTTCGGTTTGACATGGAAAGAATTCTGGGGAGCTCACCGAAGCTTGCAGAATTACCTCCTGGAGAAATCGTGTAA 996 43.47 MSSLTLKPSFPTSKLSFLSSSSSSSSTFPRFSPISFPRKLRYGVALRLRAYNSSKSDSPDASSGDSKLPNGTLPKTRRDILLEYVKNVQPEFMELFVQRAPQQVVEAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEPKEEKDDSNYAAGTQKNVTGEVIRWNNVSGPEKIDAKRYIELLEAEIEELNRQVGRKSSQGQNELLEYLKTLEPQNLKELSSSAGEDAVDAMNTFIKRLLAASDPTQMKTSVTETTAPELAKLLYWLMVVGYGIRNIEVRFDMERILGSSPKLAELPPGEIV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6433955 6439316 - Cp4.1LG11g07960.1 Cpe11g00796 477590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00796 331 MobiDBLite consensus disorder prediction 1 30 - -
Cpe11g00796 331 Pfam Protein of unknown function (DUF760) 233 316 IPR008479 -
Cpe11g00796 331 Pfam Protein of unknown function (DUF760) 81 162 IPR008479 -
Cpe11g00796 331 MobiDBLite consensus disorder prediction 53 74 - -
Cpe11g00796 331 PANTHER OS02G0833400 PROTEIN 13 330 - -
Cpe11g00796 331 MobiDBLite consensus disorder prediction 53 70 - -
Cpe11g00796 331 PANTHER OS02G0833400 PROTEIN 13 330 - -
Cpe11g00796 331 Coils Coil 202 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00796 - - - csv:101214493 535.798
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00585 Cpe11g00796 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00538 Cpe-Chr3:3151781 Cpe11g00796 Cpe-Chr11:6433955 3.37E-17 dispersed
Cpe04g00310 Cpe-Chr4:3882383 Cpe11g00796 Cpe-Chr11:6433955 1.11E-21 dispersed
Cpe11g00796 Cpe-Chr11:6433955 Cpe07g00585 Cpe-Chr7:3927951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g115 Blo01g01625 . . . Bpe02g00317 . . Bma01g02400 Cmo05g01005 Cmo12g00612 . . . Car12g00654 Sed08g1831 . Cpe07g00585 Bhi04g01568 Tan02g1531 Cmetu03g1799 . Hepe08g1489 . Lcy13g2253 Cla08g00952 Cam08g1405 Cec08g0985 Cco08g1108 Clacu08g1109 . Cre08g0892 . . Cone17ag1445 Cone20ag0031 . . . Cme03g01352 . . Bda11g00962 . . . . . . . . Cma12g00674 Cma05g00987 Car05g00867 . Cpe11g00796 . . . . . . . . . . . . . . . Lsi08g00797 . Chy03g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008235 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00796 Cpe_Chr11 FPKM 4.137813 5.065125 11.013657 11.807379 9.790387 8.14352 10.157813 10.720501 10.684234 9.688857