Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00800 ATGGGCTGCGCTTCCTCCAAGCTCGACAATCTTCCGGCGGTGGCTCTTTGCCGTGACCGCTGCAAATTCCTTGACCAAGCTCTCGTTTTTACCCATTCCCTTATTGATTCCCACTCTGCTTATGCTGATTCACTCAACAAAGTCGCCTCCTCTCTCCGCCGTTTGTTTGACCAAGATGGTGAAAGCTGCGGCGGCGGCGGTGGAGATTTGAAATGTCCTCCTCCGCCGTCTGCCGCTCCTTCATCGGAGCGATTTGATTCTGATTCTGATTCCGATTCGGAATCGGACGATGAAGAAGATGGGTGTTTTACACAAGAGAAACCACGATCTCCCCAGATCGGAAACTTAATGTTCTCGAATTATGATTCGGCGAGGGGACAGCCACCGCCGCCGCCGCCGACTGGCTCATCATGGGATTTCTTCAATTTCTTCGAAACCTACGAGAGATACGAACAACCCAATTTCAATTGGGACCGTGAAGGACAAGATCAAAAACCAGGAACAACAAGAGTTGTAACGAACAAGAAGAAGAAGCAGAAGAAACCGCCGGTGGTGGCTCCGCCGGAGAAATTAAACCAACCGGAGAAGAAAATCGATGAATCGAAAATGGGTGTTGTGGATTTAATGAGAGAAATCAAGTGTTCGTTTGAAAAAGCATCTGAATCCAGCAATTCCATCTCCAAGCTGCTTTCTTATGGCCAAAGAATGAGTTTCTGCAAAGATTCAAGAACAAGCTCTCGAGGGCTGCTATCTACCTTGAAGAAGCTCTGTGTTTGGGAGCAGAAACTGTACCTGGAAGTGAAGGCTTTGGAGAGACTGCGTATGATTCTTGAAAAGAAATGCCGGCAGCTAAAGAATTTGGTGGAGAAGAACGCCGATGATCGGAAAATTGATTCAGTTCGTAGCTCGATCAGAAATTTATCGATCAAATNTTTGGAGAGACTGCGTATGATTCTTGAAAAGAAATGCCGGCAGCTAAAGAATTTGGTGGAGAAGAACGCCGATGATCGGAAAATTGATTCAGTTCGTAGCTCGATCAGAAATTTATCGATCAAATTGAATGTTTCAATTCAGGTGGTTGATCGGATTTCGATAACCATTAGTAAGCTGAGGGATGAAGAATTCTTGGCAGAAATGAATGAATTGATTCATGGATTACAGAGCATGTGGAAAGCCATGTCGGAAGCTCACAAGCAGCAAACCCAAGCATTAACGGACGCCAAACCCTTCGAATCAGTCCTCAACGGCGCCTTGGACGACGCGCATCTGGAAGCCGCCATGGATTTAAAGCTCGAGCTCGAGAATTGGAGATCAAATTTCGTGAACTTAATCACCACGCAAAAGGATTGCATCAAAGCTCTCAACGGTTGGCTACTCCGGTGTCTATTACACGAACCCGAGCCGGAAGAAACCCCGAATGGCGGCTGTCCGCCGCCATTCTCTCCGGCGAGAATCGGTGCTCCTCCTGTATTCGTAATAGCGTACCTCTGGTCCGACACGGCCGACAAATTCTCCGACAAGGATGTCTCTGAGGCTATACAGGGGGTGGTGTCGAAGTTGGACGAGGCGCTGGAGCAGCAGAGTTGGGATTTGCAGAGATTGTCGTTGGGGAACAGAGATTTGGAGAAGAAGATTAAGGCGAAGAAGATGAATCAAGAAATTGAGGAGAAGACAACGGCGGCGGTGGCGGCGGGGACTGTGCATAAAGTGGGGAAGTTTAATGGGTGTGAGATTCAACAGGGGGTGCGGCAGGTTTTTGTGGGGTTGACGATGTTTTGTGGGGACTCCATTACAGCATACGAGGAGCTCTGTTCTTCAGCCATAGCTCAGAGCCAGCCAGGTCCGCCATAG 1851 48.35 MGCASSKLDNLPAVALCRDRCKFLDQALVFTHSLIDSHSAYADSLNKVASSLRRLFDQDGESCGGGGGDLKCPPPPSAAPSSERFDSDSDSDSESDDEEDGCFTQEKPRSPQIGNLMFSNYDSARGQPPPPPPTGSSWDFFNFFETYERYEQPNFNWDREGQDQKPGTTRVVTNKKKKQKKPPVVAPPEKLNQPEKKIDESKMGVVDLMREIKCSFEKASESSNSISKLLSYGQRMSFCKDSRTSSRGLLSTLKKLCVWEQKLYLEVKALERLRMILEKKCRQLKNLVEKNADDRKIDSVRSSIRNLSIKXLERLRMILEKKCRQLKNLVEKNADDRKIDSVRSSIRNLSIKLNVSIQVVDRISITISKLRDEEFLAEMNELIHGLQSMWKAMSEAHKQQTQALTDAKPFESVLNGALDDAHLEAAMDLKLELENWRSNFVNLITTQKDCIKALNGWLLRCLLHEPEPEETPNGGCPPPFSPARIGAPPVFVIAYLWSDTADKFSDKDVSEAIQGVVSKLDEALEQQSWDLQRLSLGNRDLEKKIKAKKMNQEIEEKTTAAVAAGTVHKVGKFNGCEIQQGVRQVFVGLTMFCGDSITAYEELCSSAIAQSQPGPP 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6464739 6467101 + Cp4.1LG11g08000.1 Cpe11g00800 477594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00800 616 Coils Coil 267 290 - -
Cpe11g00800 616 PANTHER UNCHARACTERIZED 309 609 - -
Cpe11g00800 616 PANTHER UNCHARACTERIZED 1 241 - -
Cpe11g00800 616 PANTHER UNCHARACTERIZED 239 310 - -
Cpe11g00800 616 MobiDBLite consensus disorder prediction 58 139 - -
Cpe11g00800 616 Pfam Protein of unknown function (DUF632) 240 310 IPR006867 -
Cpe11g00800 616 Pfam Protein of unknown function (DUF632) 309 520 IPR006867 -
Cpe11g00800 616 MobiDBLite consensus disorder prediction 152 193 - -
Cpe11g00800 616 MobiDBLite consensus disorder prediction 108 122 - -
Cpe11g00800 616 PANTHER F5M15.15 309 609 - -
Cpe11g00800 616 PANTHER F5M15.15 1 241 - -
Cpe11g00800 616 PANTHER F5M15.15 239 310 - -
Cpe11g00800 616 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Cpe11g00800 616 Coils Coil 531 551 - -
Cpe11g00800 616 Coils Coil 309 310 - -
Cpe11g00800 616 Coils Coil 312 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00800 - - - csv:101213768 836.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00800 Cpe-Chr11:6464739 Cpe15g00633 Cpe-Chr15:7076890 4.63E-13 dispersed
Cpe11g00800 Cpe-Chr11:6464739 Cpe16g00343 Cpe-Chr16:5211089 7.85E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00800 Cpe_Chr11 FPKM 12.024684 14.199558 7.935836 8.495051 12.646146 13.033464 11.815264 15.120361 13.966351 14.069683