Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00806 ATGTTTGTGTCAAGTTTCAGCGAGTACACTGTGGTGGATGTTACTCACCTCATTAAGCTTGATCCTATTCTCATCTCTCCCGACAAGGCATGCCTCCTTGGCTGGGTGGGTGCTGCTTGGAGAACAGCAAATGTGGAAAAGGGATCTACTGTTGCCATTTTTGGACTGGGGACCGTAGGCTTAGCAGTTGCTCAAGGAGCAAGAATATGTGGAGCAGCAAGGATTATTGGGATCGATATCAACCCGGATAAATTAACAATGGGCAAGTATCTTACATCAAAAGAGTGTGGAGTCACAGAGTTCGTTAATTCTAGAAGCATTGGGGATAAATCTGTGAGCCAGGTAATTATTGAGATGACGGATGGCGGTGCAGACTATTGCTTTGAATGCGTTGGACTAAGTTCCTTAATCAAGGAAGCATTTGCATGCTGCAGAAAGGGTCGGGGGAAAACAATTTTATTTGGTGTGGAGGACTCAGTTTCAGTTTTGGGTCTCAAATCTATAGATGTTATTTCTCAAGGGAAAACGGTGATAGGATGCATATATGGTGGACTGAAGCCCAAATCAGACATTCCCACACTCATTCAATGGTACCTAGATAAGAAACTACAATTGGATTTATTTATCTCACACGAGGTTGGCTTTGAAGAAATCAACAAAGCTTTCAATTTGCTAAGTGAAGGGCAATGCCTTAGGTGTGTGATCTGGATGACCAAATGA 720 42.92 MFVSSFSEYTVVDVTHLIKLDPILISPDKACLLGWVGAAWRTANVEKGSTVAIFGLGTVGLAVAQGARICGAARIIGIDINPDKLTMGKYLTSKECGVTEFVNSRSIGDKSVSQVIIEMTDGGADYCFECVGLSSLIKEAFACCRKGRGKTILFGVEDSVSVLGLKSIDVISQGKTVIGCIYGGLKPKSDIPTLIQWYLDKKLQLDLFISHEVGFEEINKAFNLLSEGQCLRCVIWMTK 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6524968 6530529 - Cp4.1LG11g08060.1 Cpe11g00806 477600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00806 239 Pfam Zinc-binding dehydrogenase 59 198 IPR013149 -
Cpe11g00806 239 Gene3D - 35 180 - -
Cpe11g00806 239 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 1 236 - -
Cpe11g00806 239 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 202 IPR036291 -
Cpe11g00806 239 Gene3D - 3 232 - -
Cpe11g00806 239 SUPERFAMILY GroES-like 188 236 IPR011032 -
Cpe11g00806 239 PANTHER ALCOHOL DEHYDROGENASE 1 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00806 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101212881 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00806 Cpe-Chr11:6524968 Cpe11g00809 Cpe-Chr11:6560124 3.87E-76 dispersed
Cpe11g00808 Cpe-Chr11:6549577 Cpe11g00806 Cpe-Chr11:6524968 4.05E-52 dispersed
Cpe11g00806 Cpe-Chr11:6524968 Cpe11g00807 Cpe-Chr11:6536622 1.87E-67 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g133 Blo01g01352 . . . . . . . Cmo05g01015 . . . . . . . . Bhi04g01548 Tan02g1549 . . Hepe08g1467 . . . . . . . . . . . . Cone20ag0045 . . . Cme03g01364 . . . . . . . . . . . . Cma05g00997 Car05g00879 . Cpe11g00806 . . . . . . . . . . . . . . . Lsi08g00811 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00806 Cpe_Chr11 FPKM 32.063316 34.663956 19.08523 20.298817 43.068817 47.278267 42.917767 20.629093 17.985115 20.672098