Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00807 ATGGAAGATACGGCGCCGCCACCCACCACCGGACTTCAACCTATCCGTTGTAAAGGGGAGGATGTGAACGAAGTTAAGGAAGGAGATACTGTCATCCCAACATTCATGGCTGACTGTGGGGACTGTAAAGATTGCTTATCAAATAAGAGCAATTTATGTTCAAAGTTGCCTTTCAGTGTGTCTCCTGGACTGCCCCGATGTGGGACAACCAGATTCACAGATCTCAATGGAGAGGTTATTCATCACTTTCTGTTTGTTTCAAGTTTCAGTGAATACACCGTGGTTGATGTCGCCAATGTAACCAAAGTTGATCCTGCTATCCCTCCAAATAGGGCATGCCTCCTCAGCTGTGGGGTATCAACAGCAAATGTGGAGAAGGGATCCACCGTTGCCATATTTGGAACAGGGTCCATTGGTTTAGCTGTCGCTGAAGGAGCAAGACTATGTGGAGCAGCCAGGATTATTGGGATAGATGTCAACCAAGATAAATTTGAAATTGGCAAGTATTCTACAACTATTATTTTCGAAAACGAATACTCGTGTTCGACATTCCTTTACGATGTTCATTTCTTGATATGCAGCGAAACAGTGATTAATGAAATGACCGGTGGTGGAGCAGACTATTGCTTTGAATGTGTTGGGTTGCCTTCCTTAGTTCAAGAGGCATATGCATGTTGCAGACAGGGATGGGGAAAAACAGTCGTGTTAGGAGTGCACAAACCAGGATCGGTGTTGAGTTTTGACTCGTTGGATGTTCTTCATACGGGAAAGACTCTTGTAGGATCATTGTTTGGAGGATTAAAGCCAAAATCTGATATTCCTCTTCTCCTTCAATGGGCTCCAAATCCAACGATTTTTCTACTCTTTTGCTGCTTCAATCCCAAGAGATTACTCTTATCTCTCAGTGAAGACGTTGTCGGAGAGGACGGACTCTCATCACCGACAAACTCCTTCCGACCTCCGTCATGGAAGATAACTCCTCGGCTGCAACTGGACTTCACTCTATCCGCTGCAGAGGATTTTCCAGGGATTGTTCCTAGAATTCTTGGCCACGAGGCAATCGGAGTGGTTGAGAGTGTAGGGAAGGATGTGAATGAAGTTAAGAAAGGAGATACAGTAATCCCAACATTCATGGCTGACTGTGGGGAATGTGAAGATTGCTTATCAAATAAGAGCAATCTATGTTCAAAATTGCCTTTCAGTGTGTCTCCCGGAATGCCCCGATGTGGGACAAGCAGATTCACAGATCTCAATGGAGAGGTTATTCATCATTTTCTGTTTGTATCAAGTTTCACTGAATACACTGTGGTAGATGTCGCCAATGTCGCCAATGTAACCAAAGTAGATCCTGCAATCCCTCCAAACAGGGCATGCCTTCTTAGTTGTGGGGTAACAACAGGGGTTGGTGCGGCATGGAGAACAGCAAATGTAGAGAAGGGATCCACTGTCGCCATATTTGGACTAGGGTTGCGGAAGGAGCAAGAATATGTGGAGCAAGCAGGATTATTGGTAATTATTGAAATGACTGGTGGAGGTGCAGACTATTGCTTTGAATGCGTTGGAATGGCTTCCTTAGTTCAAGAAGCATTCACATGCTGTAGACAGGGTTGGGGTAAAACAATCGTGGTGGGAGTGGACAAGCCTGGATCACTATTGAATCTTAGCTCTTACGAAGTCCTTCATCGTGGGAAGACTATCATGGGATCCTTGTTCGGGGGAACAAAGCCCAAATCAGATATTCCCACCCTCCTTAACTGGTACACTGATAAGAAACTTGAACTGGATAAATTTGTGACCCACGAAGTAGGTTTGGAAGATATCAACCAAGCTTTTAATCTGCTAATTGAAGGAAAGTCCTTGAGATCTGTGATTTGGATGAACAATTGA 1887 44.52 MEDTAPPPTTGLQPIRCKGEDVNEVKEGDTVIPTFMADCGDCKDCLSNKSNLCSKLPFSVSPGLPRCGTTRFTDLNGEVIHHFLFVSSFSEYTVVDVANVTKVDPAIPPNRACLLSCGVSTANVEKGSTVAIFGTGSIGLAVAEGARLCGAARIIGIDVNQDKFEIGKYSTTIIFENEYSCSTFLYDVHFLICSETVINEMTGGGADYCFECVGLPSLVQEAYACCRQGWGKTVVLGVHKPGSVLSFDSLDVLHTGKTLVGSLFGGLKPKSDIPLLLQWAPNPTIFLLFCCFNPKRLLLSLSEDVVGEDGLSSPTNSFRPPSWKITPRLQLDFTLSAAEDFPGIVPRILGHEAIGVVESVGKDVNEVKKGDTVIPTFMADCGECEDCLSNKSNLCSKLPFSVSPGMPRCGTSRFTDLNGEVIHHFLFVSSFTEYTVVDVANVANVTKVDPAIPPNRACLLSCGVTTGVGAAWRTANVEKGSTVAIFGLGLRKEQEYVEQAGLLVIIEMTGGGADYCFECVGMASLVQEAFTCCRQGWGKTIVVGVDKPGSLLNLSSYEVLHRGKTIMGSLFGGTKPKSDIPTLLNWYTDKKLELDKFVTHEVGLEDINQAFNLLIEGKSLRSVIWMNN 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6536622 6548663 + Cp4.1LG11g08130.1 Cpe11g00807 477601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00807 628 PANTHER ALCOHOL DEHYDROGENASE 18 280 - -
Cpe11g00807 628 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 503 625 - -
Cpe11g00807 628 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 330 489 - -
Cpe11g00807 628 Gene3D - 330 628 - -
Cpe11g00807 628 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 350 364 IPR002328 GO:0008270|GO:0016491
Cpe11g00807 628 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 452 590 IPR036291 -
Cpe11g00807 628 Gene3D - 492 569 - -
Cpe11g00807 628 Pfam Alcohol dehydrogenase GroES-like domain 339 441 IPR013154 -
Cpe11g00807 628 Pfam Alcohol dehydrogenase GroES-like domain 18 102 IPR013154 -
Cpe11g00807 628 SUPERFAMILY GroES-like 576 625 IPR011032 -
Cpe11g00807 628 SUPERFAMILY GroES-like 340 485 IPR011032 -
Cpe11g00807 628 Pfam Zinc-binding dehydrogenase 138 279 IPR013149 -
Cpe11g00807 628 Pfam Zinc-binding dehydrogenase 505 587 IPR013149 -
Cpe11g00807 628 Gene3D - 126 258 - -
Cpe11g00807 628 PANTHER ALCOHOL DEHYDROGENASE 503 625 - -
Cpe11g00807 628 PANTHER ALCOHOL DEHYDROGENASE 330 489 - -
Cpe11g00807 628 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 107 280 IPR036291 -
Cpe11g00807 628 SUPERFAMILY GroES-like 18 123 IPR011032 -
Cpe11g00807 628 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 18 280 - -
Cpe11g00807 628 Gene3D - 16 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00807 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101206456 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00807 Cpe-Chr11:6536622 Cpe11g00809 Cpe-Chr11:6560124 5.10E-93 dispersed
Cpe11g00806 Cpe-Chr11:6524968 Cpe11g00807 Cpe-Chr11:6536622 1.87E-67 tandem
Cpe11g00807 Cpe-Chr11:6536622 Cpe11g00808 Cpe-Chr11:6549577 6.51E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00807 Cpe_Chr11 FPKM 4.695652 6.090321 0.0 0.0 0.0 0.444543 0.0 0.805714 0.731494 0.775083