Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00844 ATGATCAAAATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTGCAGTCAATGGAAATGATAAGTCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCAATTGGCCGATCACTCAAGTTTGGAGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGATGAAGATCTTCGACCCTCAAGACAAATTGCTCTTATTTTTCAATAAACTTTTTGTCATATCATGTTTTTTGGCAATATCTGTGGACCCACTGTTCTTTTATGTTCCTGTTATTAATGGAAACTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTGTCCACATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTACACAAATTGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCCGATGTATATGTGACAAAACAAGCCCTTCTTTTAATTGTATTCCTACAATATATCCCAAGATTTCTTAGAGCGGTACCATTGACTTCAGAATTGAAAAGGACAACAGGTGTATTTGCTGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTAAGGCCCCGATTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGGCATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTGGATGGCATTAAGTCAAGTTGCAAACCTGCTGATGATAATGATCAGTTTGATTTTGGAATCTTTAAACAGGCTCTGTCCTCTGGTATTGCCGCATCTAAGAGTTTTATCGTTAAATATTGTTACTGTCTGTGGTGGGGGCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATTGCATTAGCTACTTATCTTCAATCTCTAACCATAAGACTTGAGGAGATGAGGGTGAAAAAGCGTGATTCGGAGCAGTGGATGCACCATCGCTTGCTGCCACAGGAGCTTCGGGAGAGAGTCAGGCGTTACGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTTTACCCAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTTGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAAAGGCTGCTTGATGCTATTTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACCACGGATGGCGGGCGGAGTGGATTTTTCAACCGTACCTTTTTGAAAGAAGCGTGGCGTCGGTATTCCAAGAGAAAGTCTTTAGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGAGCTCAAACTACTACAAGCGGAGGATCTTATAGTATTCGTGCAACGTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGTGGCGTTCAGCGATATCGGAACGCGAAAAGCGCTCAGGAATTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTACCGCTGATGATGCGGATTGA 1929 42.72 MIKMFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVNGNDKSSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKMKIFDPQDKLLLFFNKLFVISCFLAISVDPLFFYVPVINGNSNCLGIDRKLAITVTTLRTIIDVFYLVHMALQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRAVPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCKAPICRKDFLYCGNQGMEGYATWNQTGVDGIKSSCKPADDNDQFDFGIFKQALSSGIAASKSFIVKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALATYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEAWRRYSKRKSLELRQKEEVAAEESEGAQTTTSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFTADDAD 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6853912 6865960 + Cp4.1LG11g08450.1 Cpe11g00844 477638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00844 642 Pfam Ion transport protein 111 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe11g00844 642 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 15 558 - -
Cpe11g00844 642 ProSiteProfiles cAMP/cGMP binding motif profile. 493 539 IPR000595 -
Cpe11g00844 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 555 639 - -
Cpe11g00844 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 558 - -
Cpe11g00844 642 SUPERFAMILY Voltage-gated potassium channels 104 411 - -
Cpe11g00844 642 CDD CAP_ED 493 546 IPR000595 -
Cpe11g00844 642 Gene3D - 110 418 - -
Cpe11g00844 642 Gene3D Helix hairpin bin 421 484 - -
Cpe11g00844 642 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 555 639 - -
Cpe11g00844 642 SUPERFAMILY cAMP-binding domain-like 423 545 IPR018490 -
Cpe11g00844 642 Gene3D Jelly Rolls 491 582 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00844 Cpe-Chr11:6853912 Cpe05g00607 Cpe-Chr5:3693807 4.27E-09 dispersed
Cpe04g00085 Cpe-Chr4:795745 Cpe11g00844 Cpe-Chr11:6853912 5.14E-15 transposed
Cpe11g00844 Cpe-Chr11:6853912 Cpe07g00711 Cpe-Chr7:5979654 1.93E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00844 K05391 - csv:101219180 1031.55