Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00862 ATGGAGGGAGATATCACAGCAATCATGGGGATGGTTATATTGCAAGTTTGCTACGCTGGTTTAAGCATTACCTCAAAGCTAGCCATGCAATCAGGAATGAACCCTCTTGTTCTTCTCACTTACAGGCAATTTTTTGGCACTTTGGCCATTGCTCCCTTTGCTTTCTTTACTGAAAGGAAAACAAGGCCAAAGATCACTTTCCCTGTTCTTGTTCAAATCTTTATCTGTTCTTTATCTGGACAAGAGAGTGTGAGAATCAAGACCAAGCCTGGTCTTGCAAAGGTGATGGGAACAATTGTGTGTATATGTGGAGCAATGCTGCTATCTTTCTACCATGGACACACCATTGGCTTAGGTGAATCAAAAATTCACTGGCCTTATGTCGAGAGGATCATGAGCAAAACAAACCCGACGAACCGTCAAGAAAACCGAACCCTCGGCTCGGTTTTGTTGCTTTGCAGCTCGTTCTCTTGGGCGTTATGGTTCGTCATTCAAGCAAGATTGAGTGTCAAGTTCAAAGCTCCTTATACAAGTACAACGTTGTTGTGCTTCATGGCCTTTTTCCAATGTGGACTCATAGCTGTAATTTCCGAGCACAACGTCGCTTCTTGGTCATTGAAAAGTCCGATCCGACTCATCTCGGCCCTTTACACGGGAATTGTGTGTTCGGGATTGACATTTAGCATCACTTCTTGGATTATACAAAGGAAAGGGCCTCTCTATGTCTCAATTTTCACCCCATTGTTGCTTATCATTGTGGCCATCTTTAGCTGGGCTCTCCTCCACGAACAACTCTACGTTGGAACTGTTCTTGGCTCGATTTTGATAATCATTGGGCTATATGGAGTGCTATGGGGAAAGTCCAAAGAGATGAAAGTAGAAGAGGAAGACAAGGTGGAAAAGGCAACAAATGGGAGTCAAAAAGATGACGTGGAATTGCAAATGAAATGA 951 43.43 MEGDITAIMGMVILQVCYAGLSITSKLAMQSGMNPLVLLTYRQFFGTLAIAPFAFFTERKTRPKITFPVLVQIFICSLSGQESVRIKTKPGLAKVMGTIVCICGAMLLSFYHGHTIGLGESKIHWPYVERIMSKTNPTNRQENRTLGSVLLLCSSFSWALWFVIQARLSVKFKAPYTSTTLLCFMAFFQCGLIAVISEHNVASWSLKSPIRLISALYTGIVCSGLTFSITSWIIQRKGPLYVSIFTPLLLIIVAIFSWALLHEQLYVGTVLGSILIIIGLYGVLWGKSKEMKVEEEDKVEKATNGSQKDDVELQMK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6998686 7001465 + Cp4.1LG11g08570.1 Cpe11g00862 477656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00862 316 Pfam EamA-like transporter family 146 284 IPR000620 GO:0016020|GO:0016021
Cpe11g00862 316 MobiDBLite consensus disorder prediction 296 316 - -
Cpe11g00862 316 SUPERFAMILY Multidrug resistance efflux transporter EmrE 208 289 - -
Cpe11g00862 316 PANTHER WAT1-RELATED PROTEIN 81 311 IPR030184 GO:0016021|GO:0022857
Cpe11g00862 316 PANTHER WAT1-RELATED PROTEIN 7 80 IPR030184 GO:0016021|GO:0022857
Cpe11g00862 316 PANTHER WAT1-RELATED PROTEIN 81 311 - -
Cpe11g00862 316 PANTHER WAT1-RELATED PROTEIN 7 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00862 - - - csv:101217670 457.218
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00844 Cpe11g00862 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00862 Cpe-Chr11:6998686 Cpe08g01338 Cpe-Chr8:9650478 1.18E-53 dispersed
Cpe11g00862 Cpe-Chr11:6998686 Cpe11g00228 Cpe-Chr11:1217523 4.04E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g59 . . . . . . . . . Cmo11g01280 Cma05g01062 . Car05g00933 . . Cpe07g00844 Cpe11g00862 . . . . . . . Cla02g01456 Cam02g1534 Cec02g1558 Cco02g1601 Clacu02g1517 Cmu02g1471 Cre02g1796 . . . Cone1ag1567 . Csa02g00519 . Cme05g01521 . . . . . . . . . Cmo05g01072 . . . . Car11g01025 . . Bhi06g01530 . . . . . . . . . . . . . Lsi11g00654 . Chy05g01017 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00546 . 27 780 Nodulin-like Gene Family AT4G19180 61.0 6.2e-252 867.5
Cpe14g00424 . 1 761 Nodulin-like Gene Family AT4G19180 60.1 6.0e-247 850.9
Cpe06g00603 CCT 24 284 Nodulin-like Gene Family AT3G45870 69.7 3.9e-98 355.1
Cpe13g00914 CCT,ECH 259 600 Nodulin-like Gene Family AT3G28050 56.4 2.7e-107 386.0
Cpe01g02361 CCT,ECH 1 322 Nodulin-like Gene Family AT3G28050 56.6 1.5e-105 380.2
Cpe05g00250 . 1 336 Nodulin-like Gene Family AT5G47470 59.1 3.3e-103 372.5
Cpe08g00736 . 1 366 Nodulin-like Gene Family AT5G47470 54.2 5.4e-98 355.1
Cpe13g00914 CCT,ECH 258 562 Nodulin-like Gene Family AT5G40230 50.9 6.2e-83 305.1
Cpe13g00914 CCT,ECH 259 562 Nodulin-like Gene Family AT5G40240 50.5 1.2e-81 300.8
Cpe07g00390 CCT,CST,ECH 16 280 Nodulin-like Gene Family AT3G53210 57.0 8.0e-85 310.8
Cpe06g00085 CCT,CST,ECH 17 267 Nodulin-like Gene Family AT3G53210 52.3 8.9e-68 254.2
Cpe10g00870 . 99 332 Nodulin-like Gene Family AT2G37450 65.4 2.0e-83 306.2
Cpe19g00374 . 99 333 Nodulin-like Gene Family AT2G37450 66.0 7.5e-83 304.3
Cpe01g01103 CCT,ECH 408 675 Nodulin-like Gene Family AT2G37450 51.9 3.1e-68 255.8
Cpe02g00548 CCT 51 291 Nodulin-like Gene Family AT2G37450 51.2 6.6e-63 238.0
Cpe06g00635 CCT 104 327 Nodulin-like Gene Family AT2G37450 51.7 4.2e-57 218.8
Cpe10g01101 . 136 265 Nodulin-like Gene Family AT2G37450 54.2 1.8e-36 150.2
Cpe10g00870 . 12 332 Nodulin-like Gene Family AT2G37460 70.4 3.9e-125 445.3
Cpe19g00374 . 12 364 Nodulin-like Gene Family AT2G37460 65.4 6.7e-125 444.5
Cpe01g01103 CCT,ECH 321 645 Nodulin-like Gene Family AT2G37460 59.7 1.4e-101 367.1
Cpe13g00840 CCT,CST,ECH 9 331 Nodulin-like Gene Family AT2G37460 56.2 3.2e-95 345.9
Cpe08g01338 CST 12 342 Nodulin-like Gene Family AT2G37460 52.7 9.1e-90 327.8
Cpe06g00635 CCT 16 327 Nodulin-like Gene Family AT2G37460 52.9 2.7e-89 326.2
Cpe01g00192 CCT,CST,ECH 11 245 Nodulin-like Gene Family AT2G37460 54.5 1.7e-64 243.8
Cpe11g00228 CCT,ECH 1 354 Nodulin-like Gene Family AT1G75500 64.0 9.5e-135 477.2
Cpe07g00390 CCT,CST,ECH 1 356 Nodulin-like Gene Family AT1G75500 62.4 1.9e-130 463.0
Cpe06g00085 CCT,CST,ECH 1 318 Nodulin-like Gene Family AT1G75500 69.6 4.2e-122 435.3
Cpe04g01387 . 20 295 Nodulin-like Gene Family AT1G75500 54.5 1.1e-90 330.9
Cpe10g00870 . 12 332 Nodulin-like Gene Family AT5G13670 52.3 8.2e-91 331.3
Cpe19g00374 . 12 336 Nodulin-like Gene Family AT5G13670 52.3 1.4e-90 330.5
Cpe01g01103 CCT,ECH 316 646 Nodulin-like Gene Family AT2G39510 63.1 5.2e-114 408.3
Cpe19g00374 . 13 361 Nodulin-like Gene Family AT2G39510 58.3 4.4e-113 405.2
Cpe10g00870 . 13 357 Nodulin-like Gene Family AT2G39510 56.9 4.1e-111 398.7
Cpe13g00840 CCT,CST,ECH 12 348 Nodulin-like Gene Family AT2G39510 59.1 1.3e-109 393.7
Cpe01g02280 . 859 1175 Nodulin-like Gene Family AT2G39510 53.9 4.3e-100 362.1
Cpe08g01338 CST 15 340 Nodulin-like Gene Family AT2G39510 53.2 4.3e-92 335.5
Cpe06g00635 CCT 18 337 Nodulin-like Gene Family AT2G39510 53.1 3.7e-91 332.4
Cpe02g00548 CCT 3 301 Nodulin-like Gene Family AT2G39510 50.5 5.8e-81 298.5
Cpe01g00192 CCT,CST,ECH 270 513 Nodulin-like Gene Family AT2G39510 51.8 4.6e-78 288.9
Cpe01g01576 . 37 239 Nodulin-like Gene Family AT2G39510 52.3 2.4e-66 250.0
Cpe01g02043 CCT 4 262 Nodulin-like Gene Family AT4G08290 61.8 2.8e-83 305.8
Cpe06g00635 CCT 14 247 Nodulin-like Gene Family AT4G08290 50.6 9.2e-63 237.7
Cpe06g00635 CCT 12 338 Nodulin-like Gene Family AT4G08300 62.5 3.4e-113 405.6
Cpe02g00548 CCT 1 302 Nodulin-like Gene Family AT4G08300 61.7 5.8e-105 378.3
Cpe08g01338 CST 15 363 Nodulin-like Gene Family AT4G08300 51.4 3.1e-90 329.3
Cpe07g00685 . 1 371 Nodulin-like Gene Family AT4G30420 52.0 1.2e-97 354.0
Cpe08g01338 CST 10 342 Nodulin-like Gene Family AT5G07050 67.4 3.8e-126 448.7
Cpe09g00479 . 6 327 Nodulin-like Gene Family AT5G07050 62.8 7.3e-114 407.9
Cpe10g00870 . 11 332 Nodulin-like Gene Family AT5G07050 52.7 2.5e-93 339.7
Cpe10g01101 . 6 263 Nodulin-like Gene Family AT5G07050 53.4 1.3e-89 327.4
Cpe06g00635 CCT 18 320 Nodulin-like Gene Family AT5G07050 50.9 5.3e-88 322.0
Cpe01g01186 . 9 208 Nodulin-like Gene Family AT5G07050 50.7 5.5e-69 258.8
Cpe03g00437 . 1 128 Nodulin-like Gene Family AT5G07050 68.0 3.0e-43 173.3
Cpe08g01338 CST 12 355 Nodulin-like Gene Family AT3G56620 52.5 1.4e-98 357.1
Cpe03g00437 . 12 131 Nodulin-like Gene Family AT3G56620 61.7 1.5e-39 161.0
Cpe11g00862 CST 2 298 Nodulin-like Gene Family AT1G09380 51.5 2.1e-94 343.2
Cpe08g01338 CST 9 345 Nodulin-like Gene Family AT2G40900 56.4 2.7e-105 379.4
Cpe10g01101 . 13 276 Nodulin-like Gene Family AT2G40900 50.6 3.1e-80 296.2
Cpe04g01387 . 13 313 Nodulin-like Gene Family AT3G18200 61.0 1.5e-103 373.6
Cpe07g00390 CCT,CST,ECH 16 321 Nodulin-like Gene Family AT3G18200 51.2 1.7e-88 323.6
Cpe06g00635 CCT 12 338 Nodulin-like Gene Family AT1G44800 61.4 4.4e-113 405.2
Cpe02g00548 CCT 1 304 Nodulin-like Gene Family AT1G44800 60.0 1.7e-104 376.7
Cpe08g01338 CST 12 363 Nodulin-like Gene Family AT1G44800 50.4 4.0e-90 328.9
Cpe10g00870 . 13 332 Nodulin-like Gene Family AT1G44800 50.6 1.4e-87 320.5
Cpe06g00603 CCT 108 378 Nodulin-like Gene Family AT5G45370 69.8 1.8e-103 372.9
Cpe06g00635 CCT 12 297 Nodulin-like Gene Family AT1G21890 61.2 2.1e-101 366.3
Cpe02g00548 CCT 1 261 Nodulin-like Gene Family AT1G21890 58.8 3.1e-92 335.9
Cpe08g01338 CST 15 318 Nodulin-like Gene Family AT1G21890 51.0 1.1e-84 310.8
Cpe10g00870 . 11 311 Nodulin-like Gene Family AT1G21890 50.6 2.4e-81 299.7
Cpe19g00374 . 11 314 Nodulin-like Gene Family AT1G21890 50.3 4.2e-81 298.9
Cpe03g01155 . 1 588 Nodulin-like Gene Family AT1G80530 57.9 2.5e-184 642.5
Cpe02g01631 . 1 547 Nodulin-like Gene Family AT1G80530 51.2 7.5e-149 524.6
Cpe14g00438 . 1 414 Nodulin-like Gene Family AT4G19450 67.7 5.9e-151 531.2
Cpe17g00288 . 22 420 Nodulin-like Gene Family AT4G19450 55.2 1.4e-120 430.3
Cpe04g01520 . 7 538 Nodulin-like Gene Family AT1G74780 59.5 5.1e-179 624.8
Cpe04g01522 CCT 1 523 Nodulin-like Gene Family AT1G74780 57.6 4.8e-169 591.7
Cpe04g01521 . 8 517 Nodulin-like Gene Family AT1G74780 58.2 1.2e-167 587.0
Cpe18g00811 CCT 79 561 Nodulin-like Gene Family AT1G74780 52.1 8.5e-142 501.1
Cpe05g01382 CCT,CST 2 538 Nodulin-like Gene Family AT4G34950 69.1 8.0e-215 743.8
Cpe16g00309 CCT,CST 9 542 Nodulin-like Gene Family AT4G34950 68.4 8.8e-214 740.3
Cpe04g00583 CCT 15 370 Nodulin-like Gene Family AT4G34950 62.5 1.0e-129 461.1
Cpe04g00584 . 1 126 Nodulin-like Gene Family AT4G34950 66.7 4.3e-43 173.3
Cpe01g02580 . 6 661 Nodulin-like Gene Family AT5G14120 63.2 2.1e-226 782.3
Cpe13g01125 . 6 542 Nodulin-like Gene Family AT5G14120 62.3 1.3e-196 683.3
Cpe05g01382 CCT,CST 1 388 Nodulin-like Gene Family AT2G16660 73.4 8.3e-147 517.3
Cpe16g00309 CCT,CST 1 388 Nodulin-like Gene Family AT2G16660 67.6 1.3e-144 510.0
Cpe04g00583 CCT 15 370 Nodulin-like Gene Family AT2G16660 65.2 7.6e-132 467.6
Cpe13g00763 . 21 182 Nodulin-like Gene Family AT2G39210 56.2 1.8e-44 177.9
Cpe14g00438 . 6 562 Nodulin-like Gene Family AT3G01630 52.8 2.9e-148 522.7
Cpe01g02580 . 6 467 Nodulin-like Gene Family AT3G01930 64.6 6.4e-164 574.3
Cpe13g01125 . 6 422 Nodulin-like Gene Family AT3G01930 64.1 4.2e-147 518.5
Cpe04g01520 . 7 541 Nodulin-like Gene Family AT1G18940 54.5 4.9e-166 581.6
Cpe04g01521 . 8 517 Nodulin-like Gene Family AT1G18940 53.6 3.9e-155 545.4
Cpe04g01522 CCT 9 523 Nodulin-like Gene Family AT1G18940 52.7 4.0e-152 535.4
Cpe04g01520 . 6 539 Nodulin-like Gene Family AT2G34350 56.5 2.3e-160 562.8
Cpe04g01521 . 6 519 Nodulin-like Gene Family AT2G34350 56.2 8.3e-158 554.3
Cpe04g01522 CCT 7 521 Nodulin-like Gene Family AT2G34350 54.3 1.4e-149 526.9
Cpe13g00763 . 21 168 Nodulin-like Gene Family AT2G28120 60.1 1.7e-39 161.4
Cpe14g00438 . 1 567 Nodulin-like Gene Family AT1G31470 57.3 9.8e-168 587.4
Cpe17g00288 . 5 580 Nodulin-like Gene Family AT1G31470 54.4 3.7e-159 558.9
Cpe06g00882 . 34 219 Nodulin-like Gene Family AT1G76800 76.9 1.1e-70 263.5
Cpe13g00679 CCT 18 212 Nodulin-like Gene Family AT1G76800 70.8 1.3e-68 256.5
Cpe01g02114 . 20 215 Nodulin-like Gene Family AT1G76800 70.9 4.8e-66 248.1
Cpe15g00276 . 10 201 Nodulin-like Gene Family AT1G76800 60.9 1.3e-58 223.4
Cpe15g00276 . 9 201 Nodulin-like Gene Family AT3G25190 66.8 1.9e-63 239.6
Cpe01g02114 . 20 215 Nodulin-like Gene Family AT3G25190 63.3 1.5e-60 229.9
Cpe13g00679 CCT 23 212 Nodulin-like Gene Family AT3G25190 62.5 4.8e-59 224.9
Cpe06g00882 . 41 219 Nodulin-like Gene Family AT3G25190 62.6 1.7e-56 216.5
Cpe06g00882 . 36 219 Nodulin-like Gene Family AT1G21140 76.1 2.7e-72 268.9
Cpe13g00679 CCT 4 212 Nodulin-like Gene Family AT1G21140 70.3 6.5e-71 264.2
Cpe01g02114 . 20 215 Nodulin-like Gene Family AT1G21140 73.5 2.5e-70 262.3
Cpe15g00276 . 7 201 Nodulin-like Gene Family AT1G21140 61.0 1.5e-62 236.5
Cpe06g00882 . 27 216 Nodulin-like Gene Family AT3G43630 74.2 7.7e-72 267.3
Cpe13g00679 CCT 7 208 Nodulin-like Gene Family AT3G43630 73.8 3.8e-71 265.0
Cpe01g02114 . 20 211 Nodulin-like Gene Family AT3G43630 76.6 1.5e-70 263.1
Cpe15g00276 . 7 198 Nodulin-like Gene Family AT3G43630 61.5 8.9e-60 227.3
Cpe06g00882 . 24 219 Nodulin-like Gene Family AT3G43660 71.9 5.9e-72 267.7
Cpe01g02114 . 10 215 Nodulin-like Gene Family AT3G43660 72.3 2.9e-71 265.4
Cpe13g00679 CCT 1 212 Nodulin-like Gene Family AT3G43660 71.2 5.0e-71 264.6
Cpe15g00276 . 7 201 Nodulin-like Gene Family AT3G43660 62.1 8.5e-63 237.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002756 1 2 1 0 1 2 3 2 2 2 2 2 3 2 3 3 2 1 1 2 2 3 2 2 2 2 2 3 2 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00862 Cpe_Chr11 FPKM 20.159113 22.577539 23.802443 23.387451 33.981174 40.92289 35.452217 29.413794 29.374056 29.865519