Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00870 ATGAACTTTACAAGGGCCCTTGACTTTAATATTCAATCCGTCATTGTTGTTGACAAGTCTGGCAAAGGCAATTTCAAGACCATTCAAGCAGCCATCGACTCAGTTCCACTTAACAACAACAAATGGGTTAAGATTGAAGTCAACCCTGGTGAATACAGAGAAATGGTGACAATCCCGTCAACAAAATCATTCATTTATCTACAAGGGGGTCACCGCAGTACGACGGTTATCACTTTCGATGGTCATCAACAAACAAATACTAGCGCTACATTTAATTCAATGGCTGATAACATTATTGCAAGAGGCATTACTTTTGAGAACTCCTTCAACCTAGCAGATGCTCCACAGCTGTTTGATAAAATTACTGGAACTTTCTTTACACAAGCATTAGCTGCAAGAATCTACGGTGACAAATCGGCTTTTATCAGCTGTAGATTCAAAGGGTTTCAAGACACATTATGGGATGTAAAAGGCCGCCACTATTTCAAAAGTTGTTACATTGAAGGTGCCATAGATTTCATCTTTGGTAATGGTCAATCAATTTATGAGGGCTGCTTGATATATGTTAATGTTGGACTTCTCCCTGAAGTCAACCAAGGATACATTACTGCACAAGGTCGACAATCCGAAAACGATCCAAGCGGATTTGTATTTCAACAGTGCACCATAACGGGGTCGGGCAAAGCTTTTTTGGGGAGAGCATATGGTCCTTTTTCCAGAGTTATATTTAAAGATACGAACATGGGGAAAGTCGTAGCACCAGAGGGATGGGATGCTTGGCACTTCAAGGGCCAAGAGTAA 801 40.95 MNFTRALDFNIQSVIVVDKSGKGNFKTIQAAIDSVPLNNNKWVKIEVNPGEYREMVTIPSTKSFIYLQGGHRSTTVITFDGHQQTNTSATFNSMADNIIARGITFENSFNLADAPQLFDKITGTFFTQALAARIYGDKSAFISCRFKGFQDTLWDVKGRHYFKSCYIEGAIDFIFGNGQSIYEGCLIYVNVGLLPEVNQGYITAQGRQSENDPSGFVFQQCTITGSGKAFLGRAYGPFSRVIFKDTNMGKVVAPEGWDAWHFKGQE 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7042513 7043615 + Cp4.1LG11g08580.1 Cpe11g00870 477664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00870 266 Pfam Pectinesterase 15 261 IPR000070 GO:0030599|GO:0042545
Cpe11g00870 266 SUPERFAMILY Pectin lyase-like 12 261 IPR011050 -
Cpe11g00870 266 Gene3D - 8 266 IPR012334 -
Cpe11g00870 266 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 264 - -
Cpe11g00870 266 PANTHER PECTINESTERASE 10 264 - -
Cpe11g00870 266 ProSitePatterns Pectinesterase signature 2. 167 176 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00870 Cpe-Chr11:7042513 Cpe11g00872 Cpe-Chr11:7067094 4.29E-134 dispersed
Cpe11g00870 Cpe-Chr11:7042513 Cpe11g00871 Cpe-Chr11:7055176 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00870 - - cmos:111450826 528.865