Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00875 ATGGATGAGTTTTACAGGCTTAACAACCCTGTCATGGCCTCATATTCTAATGGTGTTCTTGGAGGTGAAGCCATTGCTAGCACCAGCTGTGGTGATATTCATGAAGCTCTAATGGTGGATGATGAACTGCTTCACCTTGAAGCAGAGCCCACCACTGGCTTGAACATGTCTGACATGATTAAGACTCAGATTATCAACCATCCCCTTTACCCCAAATTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCATCCTTCTAGATCTTGTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTTATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAGCCATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCAACGTCCGAATCTCGTTCCGTCATCAACGAGGAAGAACCGAGCAGCTACGGGGAGGTAGAAACGACAGGGAATCACGAGCCGTTCAGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTTTGAAGAAGGAATTCTTGAAGAAGAGGAAGAAGGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTACTTGAGTGGTGGAGTACTCATTATAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTCTCTGTTATCACTGGTTTGGATCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATGCGGTTCATGCTCATGGACGGGGCTGGGGCCGGGGTCGGGGACGGGGAATGCATCAAAGGATTGAATCAGGCCATATAA 930 44.84 MDEFYRLNNPVMASYSNGVLGGEAIASTSCGDIHEALMVDDELLHLEAEPTTGLNMSDMIKTQIINHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAMFLTNIELELSNLCKGSFTATSESRSVINEEEPSSYGEVETTGNHEPFSTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLEWWSTHYKWPYPTEEEKSKLSVITGLDQKQINNWFINQRKRHWKPPEDMRFMLMDGAGAGVGDGECIKGLNQAI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7100812 7104653 + Cp4.1LG11g08730.1 Cpe11g00875 477669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00875 309 Pfam ELK domain 197 218 IPR005539 GO:0003677
Cpe11g00875 309 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Cpe11g00875 309 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 291 - -
Cpe11g00875 309 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Cpe11g00875 309 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Cpe11g00875 309 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Cpe11g00875 309 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Cpe11g00875 309 SUPERFAMILY Homeodomain-like 219 290 IPR009057 -
Cpe11g00875 309 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Cpe11g00875 309 SMART ELK_2 197 218 IPR005539 GO:0003677
Cpe11g00875 309 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 291 - -
Cpe11g00875 309 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Cpe11g00875 309 CDD homeodomain 229 280 IPR001356 GO:0003677
Cpe11g00875 309 Gene3D - 222 283 - -
Cpe11g00875 309 MobiDBLite consensus disorder prediction 165 191 - -
Cpe11g00875 309 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Cpe11g00875 309 SMART HOX_1 219 284 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00857 Cpe11g00875 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00513 Cpe-Chr9:3419266 Cpe11g00875 Cpe-Chr11:7100812 8.87E-78 dispersed
Cpe11g00023 Cpe-Chr11:125984 Cpe11g00875 Cpe-Chr11:7100812 2.31E-76 dispersed
Cpe11g00875 Cpe-Chr11:7100812 Cpe19g00947 Cpe-Chr19:6757566 4.67E-69 dispersed
Cpe11g00875 Cpe-Chr11:7100812 Cpe07g00857 Cpe-Chr7:7771796 6.30E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50265 PF03791 KNOX2 7.20E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00875 - - csv:101203403 519.235