Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00875 | ATGGATGAGTTTTACAGGCTTAACAACCCTGTCATGGCCTCATATTCTAATGGTGTTCTTGGAGGTGAAGCCATTGCTAGCACCAGCTGTGGTGATATTCATGAAGCTCTAATGGTGGATGATGAACTGCTTCACCTTGAAGCAGAGCCCACCACTGGCTTGAACATGTCTGACATGATTAAGACTCAGATTATCAACCATCCCCTTTACCCCAAATTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCATCCTTCTAGATCTTGTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTTATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAGCCATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCAACGTCCGAATCTCGTTCCGTCATCAACGAGGAAGAACCGAGCAGCTACGGGGAGGTAGAAACGACAGGGAATCACGAGCCGTTCAGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTTTGAAGAAGGAATTCTTGAAGAAGAGGAAGAAGGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTACTTGAGTGGTGGAGTACTCATTATAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTCTCTGTTATCACTGGTTTGGATCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATGCGGTTCATGCTCATGGACGGGGCTGGGGCCGGGGTCGGGGACGGGGAATGCATCAAAGGATTGAATCAGGCCATATAA | 930 | 44.84 | MDEFYRLNNPVMASYSNGVLGGEAIASTSCGDIHEALMVDDELLHLEAEPTTGLNMSDMIKTQIINHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAMFLTNIELELSNLCKGSFTATSESRSVINEEEPSSYGEVETTGNHEPFSTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLEWWSTHYKWPYPTEEEKSKLSVITGLDQKQINNWFINQRKRHWKPPEDMRFMLMDGAGAGVGDGECIKGLNQAI | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7100812 | 7104653 | + | Cp4.1LG11g08730.1 | Cpe11g00875 | 477669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00875 | 309 | Pfam | ELK domain | 197 | 218 | IPR005539 | GO:0003677 | |
Cpe11g00875 | 309 | ProSiteProfiles | 'Homeobox' domain profile. | 217 | 280 | IPR001356 | GO:0003677 | |
Cpe11g00875 | 309 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 | 1 | 291 | - | - | |
Cpe11g00875 | 309 | ProSiteProfiles | ELK domain profile. | 197 | 217 | IPR005539 | GO:0003677 | |
Cpe11g00875 | 309 | Pfam | KNOX1 domain | 60 | 101 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00875 | 309 | SMART | KNOX1_2 | 58 | 102 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00875 | 309 | Pfam | Homeobox KN domain | 237 | 276 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe11g00875 | 309 | SUPERFAMILY | Homeodomain-like | 219 | 290 | IPR009057 | - | |
Cpe11g00875 | 309 | SMART | KNOX2_2 | 105 | 156 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00875 | 309 | SMART | ELK_2 | 197 | 218 | IPR005539 | GO:0003677 | |
Cpe11g00875 | 309 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 291 | - | - | |
Cpe11g00875 | 309 | ProSitePatterns | 'Homeobox' domain signature. | 255 | 278 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe11g00875 | 309 | CDD | homeodomain | 229 | 280 | IPR001356 | GO:0003677 | |
Cpe11g00875 | 309 | Gene3D | - | 222 | 283 | - | - | |
Cpe11g00875 | 309 | MobiDBLite | consensus disorder prediction | 165 | 191 | - | - | |
Cpe11g00875 | 309 | Pfam | KNOX2 domain | 109 | 155 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00875 | 309 | SMART | HOX_1 | 219 | 284 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00857 | Cpe11g00875 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00513 | Cpe-Chr9:3419266 | Cpe11g00875 | Cpe-Chr11:7100812 | 8.87E-78 | dispersed | |
Cpe11g00023 | Cpe-Chr11:125984 | Cpe11g00875 | Cpe-Chr11:7100812 | 2.31E-76 | dispersed | |
Cpe11g00875 | Cpe-Chr11:7100812 | Cpe19g00947 | Cpe-Chr19:6757566 | 4.67E-69 | dispersed | |
Cpe11g00875 | Cpe-Chr11:7100812 | Cpe07g00857 | Cpe-Chr7:7771796 | 6.30E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50265 | PF03791 | KNOX2 | 7.20E-21 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00875 | - | - | csv:101203403 | 519.235 |