Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00890 ATGGCGTCGAGGAATCGGACTTTGATTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCGGCTCTTCGCCTGCTTCTGCATCGCCATCGACTAGCTCTGGCACTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTAAAGATGATGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGATAAAGAAGATCAACGGTTAATTGAATCTCTCACGCAAGACATAACTAACTTAATCAAGAAATCGGAGAAGGGGCTCAAGAGATTTTCCGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGACCTTCAGAACCTCTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGGAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAACAGGTCGAGAATGGAGGAGGACGATGATTTAGAAGACATGGTATTTAACGAGCATCAGATGGCTAAGGTGCGTAAGACTGAAGCATTCACCGCAGAAAGAGAGAGAGAGATCCAACAAGTAGTAGAATCCGTGAACGAGCTCGCTCAGATCATGAAGGATCTATCGGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATCCAAAATGTTGCGACGACGGTCGAGGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAGAACACAGAAACAAGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTAATCCTTAAATCCATCCTATTTTGA 993 45.92 MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDDKEDQRLIESLTQDITNLIKKSEKGLKRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGGQDGIDIEMNLNGNRSRMEEDDDLEDMVFNEHQMAKVRKTEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKSILF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7181930 7186151 - Cp4.1LG11g08910.1 Cpe11g00890 477684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00890 330 MobiDBLite consensus disorder prediction 21 44 - -
Cpe11g00890 330 ProSitePatterns Syntaxin / epimorphin family signature. 240 279 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe11g00890 330 CDD SNARE_syntaxin16 238 295 - -
Cpe11g00890 330 Pfam SNARE domain 270 322 IPR000727 -
Cpe11g00890 330 SMART tSNARE_6 229 296 IPR000727 -
Cpe11g00890 330 Gene3D - 79 288 - -
Cpe11g00890 330 PANTHER SYNTAXIN-43-LIKE 1 325 - -
Cpe11g00890 330 SMART SynN_4 73 188 IPR006011 GO:0016020
Cpe11g00890 330 PANTHER SYNTAXIN 1 325 IPR045242 -
Cpe11g00890 330 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 234 296 IPR000727 -
Cpe11g00890 330 MobiDBLite consensus disorder prediction 23 44 - -
Cpe11g00890 330 SUPERFAMILY t-snare proteins 78 289 IPR010989 GO:0016020|GO:0016192
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00878 Cpe11g00890 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00870 Cpe-Chr8:6869032 Cpe11g00890 Cpe-Chr11:7181930 1.77E-13 dispersed
Cpe11g00890 Cpe-Chr11:7181930 Cpe14g00975 Cpe-Chr14:8249458 4.54E-11 dispersed
Cpe12g00911 Cpe-Chr12:7883999 Cpe11g00890 Cpe-Chr11:7181930 4.03E-124 transposed
Cpe11g00890 Cpe-Chr11:7181930 Cpe07g00878 Cpe-Chr7:7899543 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00890 K08489 - csv:101207998 575.474