Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00928 ATGGGGTGTTTGGTTAGCCGAGAGGTGTCTTCTGGAAATGCAGAATCCCCTGTAGATAAGGAAAGGAGAAATCCAATTACTGTAGAACATGTGAGTGCTAATGTAGAGGAGCATGTAAATGTAAACAAGGAGGAGCAGAAAGCTGATGGATGTTCGGATCGTCCACGAGCTAAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCGACGAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATAATTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTCGACAATCTCGAACCCGAAAGTGTGCAATTTATGGCTAGAGAGATTCTCATTCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTATATGGAGCATGATTTAGCTGGTCTTGCTGCGAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCGTGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGTCGGGTGCTTCATCGTGACATTAAAGGATCTAACCTTCTCATTGATAGTGGGGGAGTGCTTAAGATAGCTGACTTTGGATTGGCTTCTATCTTTGATCCGAATCACAAGCACCCTATGACGAGTCGGGTGGTTACGTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTTGGTGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATACTGGAAAAGAGCAAAACTTCCAAATGCAACCTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACGTTTAAAGATTTCCCGCCATCTTCACTGCCCCTTATCGAAACGCTTCTTGCAATTGATCCAGTAGAACGAAAGGAAGCGACAGATGCGTTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCTTGCGAACCTTCCGACCTCCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGAGATGATGAAGCTCGGAGACTAAAAGCAGCTAGTAAAGCCCAGGGAGATGGAACGAAAAAAACACGCACACGTTTTCGGGCTATTCCAGCTCCTGAAGCCAATGCCGAAATACAAACTAATATCGACAGAAGGCGCATAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAGGATGGAGAGCTTGGCTATACGCTAGGACATTCACGTCATATCGACCCATCCCGTGTTCCTTCCGACGTACCATTCAGCTCGACGACGCTTTTCACTTTTTCTAAGGAGCCACTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGCTCTGGCACTGATGCTCCTACTAGATACAAGAAGCATGTAGGAGGTAAAGGCAAGAGAATCATGGTCTGA 1581 44.53 MGCLVSREVSSGNAESPVDKERRNPITVEHVSANVEEHVNVNKEEQKADGCSDRPRAKRRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDIITGKIVALKKVRFDNLEPESVQFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFVQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPVERKEATDALNSEFFMTEPLACEPSDLPKYPPSKEMDARRRDDEARRLKAASKAQGDGTKKTRTRFRAIPAPEANAEIQTNIDRRRIITHANAKSKSEKFPPPHQDGELGYTLGHSRHIDPSRVPSDVPFSSTTLFTFSKEPLQAWSGPLVPGSGTDAPTRYKKHVGGKGKRIMV 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7792142 7797642 - Cp4.1LG11g09270.1 Cpe11g00928 477722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00928 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cpe11g00928 526 Pfam Protein kinase domain 107 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00928 526 PANTHER CELL DIVISION PROTEIN KINASE 43 290 - -
Cpe11g00928 526 SMART serkin_6 107 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00928 526 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cpe11g00928 526 PANTHER CELL DIVISION PROTEIN KINASE 289 510 - -
Cpe11g00928 526 MobiDBLite consensus disorder prediction 1 78 - -
Cpe11g00928 526 Gene3D Transferase(Phosphotransferase) domain 1 190 288 - -
Cpe11g00928 526 Gene3D Transferase(Phosphotransferase) domain 1 289 406 - -
Cpe11g00928 526 MobiDBLite consensus disorder prediction 381 413 - -
Cpe11g00928 526 MobiDBLite consensus disorder prediction 376 413 - -
Cpe11g00928 526 PANTHER OS01G0367700 PROTEIN 289 510 - -
Cpe11g00928 526 SUPERFAMILY Protein kinase-like (PK-like) 101 370 IPR011009 -
Cpe11g00928 526 ProSiteProfiles Protein kinase domain profile. 107 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00928 526 PANTHER OS01G0367700 PROTEIN 43 290 - -
Cpe11g00928 526 MobiDBLite consensus disorder prediction 36 56 - -
Cpe11g00928 526 MobiDBLite consensus disorder prediction 501 526 - -
Cpe11g00928 526 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00932 Cpe11g00928 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01388 Cpe-Chr3:11172333 Cpe11g00928 Cpe-Chr11:7792142 0 dispersed
Cpe04g00238 Cpe-Chr4:2917641 Cpe11g00928 Cpe-Chr11:7792142 0 dispersed
Cpe11g00928 Cpe-Chr11:7792142 Cpe20g00292 Cpe-Chr20:1630422 0 dispersed
Cpe11g00928 Cpe-Chr11:7792142 Cpe08g00215 Cpe-Chr8:1430904 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62720 PF00069 Pkinase 2.80E-50 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00928 K08819 - csv:101215893 952.97