Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe11g00947 | ATGGCATTAGAAGCTGTGGTTTTTTCTCAAGATCTTTACACCTCGTTTGGTGGAGGGATTTGGACAAATGGGAGCTTTCAATTTCCCCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATTACCCTTTTGAAGATTGGAACTCATCCTCCTCTGTTTTGCTTCCTATTCCTTCCCCTGAAGAACCTGCCATTTCCAGAAATCCGCCATTGGAGGCTGAATCAAGAACTCCAAACCCAATTCGACCCAGAAAACGACGACCCAAATCCCGCAAGAACAAGGAAGATATCGAGAATCAGAGAATGACCCACATCGCTGTTGAACGAAATCGACGAAAACAGATGAATGAGTATCTCTCTGTTCTTAGATCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCTATTAATTTTGTGAAGGAGCTTGAGCAACAAGTTCAAGTTCTATCAACAATGGAAACAAAAACAAAGGGCTGTTCTTCATCAAAGCCCCCTTTTTCTGAGTTCTTCACCTTCCCTCAGTTCAAATCAATGGAGGGTTGTTGTTCATTGGGTGAAAACGAAACCCAATGTTCTTCCATTGCTGATATCGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAGAGAAGGCCAAAACAAGCCTTGAAAATCGTTGCTGGCTTGCATTCTCTTTGCCTCTCTGTTCTTCATCTCAATATCTCTACCATAAACCAAATTGTTCTTTACTGTCTAAGCGTGAAGGTTGAAGATGATTGCAAGCTGAATTCTGTTGATGAAATTGCATCTGCTCTGCATCAGTTGCTTTGTAGAATCGAAGAAGAATCAGTGATGAACTGA | 879 | 40.96 | MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENYPFEDWNSSSSVLLPIPSPEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKTKGCSSSKPPFSEFFTFPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCLSVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8017880 | 8018916 | + | Cp4.1LG11g09400.1 | Cpe11g00947 | 477741 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe11g00947 | 292 | MobiDBLite | consensus disorder prediction | 54 | 102 | - | - | |
| Cpe11g00947 | 292 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 100 | 162 | IPR036638 | GO:0046983 | |
| Cpe11g00947 | 292 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 1 | 292 | - | - | |
| Cpe11g00947 | 292 | SMART | finulus | 106 | 157 | IPR011598 | GO:0046983 | |
| Cpe11g00947 | 292 | Pfam | Helix-loop-helix DNA-binding domain | 101 | 152 | IPR011598 | GO:0046983 | |
| Cpe11g00947 | 292 | PANTHER | MAX DIMERIZATION, MAD | 1 | 292 | - | - | |
| Cpe11g00947 | 292 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 151 | IPR011598 | GO:0046983 | |
| Cpe11g00947 | 292 | Gene3D | - | 99 | 167 | IPR036638 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00142 | Cpe11g00947 | CCT | |
| Cpe07g00915 | Cpe11g00947 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00192 | Cpe-Chr7:1197560 | Cpe11g00947 | Cpe-Chr11:8017880 | 1.56E-82 | dispersed | |
| Cpe08g00665 | Cpe-Chr8:4574104 | Cpe11g00947 | Cpe-Chr11:8017880 | 4.09E-53 | dispersed | |
| Cpe11g00455 | Cpe-Chr11:2566773 | Cpe11g00947 | Cpe-Chr11:8017880 | 7.86E-83 | dispersed | |
| Cpe04g00142 | Cpe-Chr4:1352534 | Cpe11g00947 | Cpe-Chr11:8017880 | 8.26E-76 | transposed | |
| Cpe11g00947 | Cpe-Chr11:8017880 | Cpe07g00915 | Cpe-Chr7:8207044 | 4.21E-98 | wgd | |
| Cpe11g00947 | Cpe-Chr11:8017880 | Cpe08g00243 | Cpe-Chr8:1599539 | 4.35E-32 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50267 | PF00010 | HLH | 6.80E-10 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe11g00947 | - | - | csv:101212782 | 453.366 |