Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00947 ATGGCATTAGAAGCTGTGGTTTTTTCTCAAGATCTTTACACCTCGTTTGGTGGAGGGATTTGGACAAATGGGAGCTTTCAATTTCCCCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATTACCCTTTTGAAGATTGGAACTCATCCTCCTCTGTTTTGCTTCCTATTCCTTCCCCTGAAGAACCTGCCATTTCCAGAAATCCGCCATTGGAGGCTGAATCAAGAACTCCAAACCCAATTCGACCCAGAAAACGACGACCCAAATCCCGCAAGAACAAGGAAGATATCGAGAATCAGAGAATGACCCACATCGCTGTTGAACGAAATCGACGAAAACAGATGAATGAGTATCTCTCTGTTCTTAGATCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCTATTAATTTTGTGAAGGAGCTTGAGCAACAAGTTCAAGTTCTATCAACAATGGAAACAAAAACAAAGGGCTGTTCTTCATCAAAGCCCCCTTTTTCTGAGTTCTTCACCTTCCCTCAGTTCAAATCAATGGAGGGTTGTTGTTCATTGGGTGAAAACGAAACCCAATGTTCTTCCATTGCTGATATCGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGATCAAAGAGAAGGCCAAAACAAGCCTTGAAAATCGTTGCTGGCTTGCATTCTCTTTGCCTCTCTGTTCTTCATCTCAATATCTCTACCATAAACCAAATTGTTCTTTACTGTCTAAGCGTGAAGGTTGAAGATGATTGCAAGCTGAATTCTGTTGATGAAATTGCATCTGCTCTGCATCAGTTGCTTTGTAGAATCGAAGAAGAATCAGTGATGAACTGA 879 40.96 MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENYPFEDWNSSSSVLLPIPSPEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKTKGCSSSKPPFSEFFTFPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCLSVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN 292
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 8017880 8018916 + Cp4.1LG11g09400.1 Cpe11g00947 477741
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00947 292 MobiDBLite consensus disorder prediction 54 102 - -
Cpe11g00947 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 162 IPR036638 GO:0046983
Cpe11g00947 292 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 292 - -
Cpe11g00947 292 SMART finulus 106 157 IPR011598 GO:0046983
Cpe11g00947 292 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Cpe11g00947 292 PANTHER MAX DIMERIZATION, MAD 1 292 - -
Cpe11g00947 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
Cpe11g00947 292 Gene3D - 99 167 IPR036638 GO:0046983
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe04g00142 Cpe11g00947 CCT
Cpe07g00915 Cpe11g00947 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00192 Cpe-Chr7:1197560 Cpe11g00947 Cpe-Chr11:8017880 1.56E-82 dispersed
Cpe08g00665 Cpe-Chr8:4574104 Cpe11g00947 Cpe-Chr11:8017880 4.09E-53 dispersed
Cpe11g00455 Cpe-Chr11:2566773 Cpe11g00947 Cpe-Chr11:8017880 7.86E-83 dispersed
Cpe04g00142 Cpe-Chr4:1352534 Cpe11g00947 Cpe-Chr11:8017880 8.26E-76 transposed
Cpe11g00947 Cpe-Chr11:8017880 Cpe07g00915 Cpe-Chr7:8207044 4.21E-98 wgd
Cpe11g00947 Cpe-Chr11:8017880 Cpe08g00243 Cpe-Chr8:1599539 4.35E-32 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50267 PF00010 HLH 6.80E-10 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00947 - - csv:101212782 453.366