Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe11g01009 | ATGGCGAACCGTTGGTGGACTTCCAGCCAGATGGGTCTTCCCGGAGTTGATCATACGTCGACGAGCTCCTCCGCCATGAGGTTACCAGATCTGGGGATCTCCATGAACGACAACAACGGCACCGTCAACAGCGGTGGAGGCGATGACGATGACGATAGAGATAACGGTGGTGATGAACCTAAGGAAGGGGTTTCTGTGCTTAGTGGCAGCGGCACGGTGACGAACGTCACACTCCGGCAACCGTCTGCGCCCGGTGCAGTCTTAACCCTTCAAGGGCGGTTCGAGATTCTCTCGTTGACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCGACCGGACTCACGATCTACTTAGCCGGTGGCCAAGGGCAGGTGGTGGGCGGTAGCGTTGTCGGGCCACTCACCGCTGCCGGGCCAGTGATGGTGATCGCCGCAACGTTTTCCAACGCTACATACGAAAGGTTACCTCTAGAGGAGGAGGAAGAAGGCGGGGGAGGAGCACAAGGGCATACATCAGCAGGCGGTGGCACCGGCGACGGTTCGCCGCAAGGCATCGGAGGAGGAGTCGGAGATCTATCAGCTATGCCACCACTATACAATTTACCACCAAATTTGCTACCAAATGGCGGCGGCGGGGGCGGCGGACAAATGAACCAGGAGGCTTATTCATGGGCTCACGGCGGCCGACCGTCGTTTTAA | 702 | 58.69 | MANRWWTSSQMGLPGVDHTSTSSSAMRLPDLGISMNDNNGTVNSGGGDDDDDRDNGGDEPKEGVSVLSGSGTVTNVTLRQPSAPGAVLTLQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGGAQGHTSAGGGTGDGSPQGIGGGVGDLSAMPPLYNLPPNLLPNGGGGGGGQMNQEAYSWAHGGRPSF | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8519080 | 8520075 | + | Cp4.1LG11g10060.1 | Cpe11g01009 | 477803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe11g01009 | 233 | Gene3D | - | 59 | 163 | - | - | |
| Cpe11g01009 | 233 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 62 | 232 | - | - | |
| Cpe11g01009 | 233 | MobiDBLite | consensus disorder prediction | 158 | 233 | - | - | |
| Cpe11g01009 | 233 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 7 | 63 | IPR014476 | GO:0003680 | |
| Cpe11g01009 | 233 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 62 | 150 | IPR005175 | - | |
| Cpe11g01009 | 233 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 7 | 63 | - | - | |
| Cpe11g01009 | 233 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Cpe11g01009 | 233 | CDD | DUF296 | 63 | 120 | IPR005175 | - | |
| Cpe11g01009 | 233 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 62 | 232 | IPR014476 | GO:0003680 | |
| Cpe11g01009 | 233 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cpe11g01009 | 233 | ProSiteProfiles | PPC domain profile profile. | 32 | 171 | IPR005175 | - | |
| Cpe11g01009 | 233 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 62 | 161 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe11g01009 | Cpe-Chr11:8519080 | Cpe01g00169 | Cpe-Chr1:954469 | 4.40E-44 | dispersed | |
| Cpe11g01009 | Cpe-Chr11:8519080 | Cpe03g01502 | Cpe-Chr3:11828854 | 4.30E-44 | wgd | |
| Cpe11g01009 | Cpe-Chr11:8519080 | Cpe07g00977 | Cpe-Chr7:8822495 | 8.32E-79 | wgd | |
| Cpe11g01009 | Cpe-Chr11:8519080 | Cpe08g00320 | Cpe-Chr8:2023409 | 3.69E-48 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe11g01009 | - | - | csv:101220902 | 226.868 |