Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01011 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCAACACCACCATCAGAGTCCCACCACATCGCCGACCAATGGCCTATTACCCCCTACCCACCACCTCTCCTCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTGTCCTCTTCGCCTCTCGAGCCTGCCCGCCGTAAGAGAGGCCGGCCGAGGAAGTACGGTACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACAGCGTCGTCTCACTCTTCGTCCTCCAAGGCTAAGAAGGACCTCGCTTCTTCTTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGTTTTCGAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTTCGCCACATGTTATTAATGTAGCGGCTGGTGAGGATGTGGGTCAGAAAATTATGCTCTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCGATCTCCAACGCATCTCTCCGTCAACCAGCGACATCTGGAGGCAATATTACATATGAGGGTCGTTTTGAGATTGTTTCATTATGCGGATCTTATATACGAACTGACTTCGGAGGAAAGACTGGTGGTCTTAGTGTATGTTTATCGAGTGCTGATGGCCATATAATAGGAGGGGGAGTCGGTGGACCGTTGAAGGCTGCTGGACCTGTGCAGGTCATTGTAGGTACCTTCGTAATCGACCCGAAGAAGGAAGTTGGTGGTGTTAAAGGTGATGCATCTGCTGGAAAGTTGCCCTCGCCTACTGGTGGGACACCAATGTCAAATCTACGCTATGGCTCGAATGTCGACTCGGGAGGTAATCAAGTCAGGGGAAACGATGAGCATCAAGGTATTGGGGAGAGTCATTTCTTGCTTCAGCCCCGGGGAGTGAACCTGACGTCGTTGCGATCTACAGACTGGAGGATGAGTCTGGATGCCACAAACAATGCTTATGATTTGACAGGAAGAACAAGCCATCATTCTCCCGAAAACGGAGATTACGATCAGATTCCCGATTGA 1071 51.45 MEPNENQLSSYFHHQHHHQSPTTSPTNGLLPPTHHLSSSDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSASSSFSAFSKKSQLAALGNAGQGFSPHVINVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLCGSYIRTDFGGKTGGLSVCLSSADGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEVGGVKGDASAGKLPSPTGGTPMSNLRYGSNVDSGGNQVRGNDEHQGIGESHFLLQPRGVNLTSLRSTDWRMSLDATNNAYDLTGRTSHHSPENGDYDQIPD 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8526798 8533844 - Cp4.1LG11g10080.1 Cpe11g01011 477805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01011 356 MobiDBLite consensus disorder prediction 1 104 - -
Cpe11g01011 356 CDD DUF296 138 248 IPR005175 -
Cpe11g01011 356 ProSiteProfiles PPC domain profile profile. 132 272 IPR005175 -
Cpe11g01011 356 MobiDBLite consensus disorder prediction 335 356 - -
Cpe11g01011 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 249 - -
Cpe11g01011 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 249 IPR005175 -
Cpe11g01011 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
Cpe11g01011 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 346 - -
Cpe11g01011 356 MobiDBLite consensus disorder prediction 259 279 - -
Cpe11g01011 356 MobiDBLite consensus disorder prediction 87 104 - -
Cpe11g01011 356 MobiDBLite consensus disorder prediction 1 34 - -
Cpe11g01011 356 Gene3D - 138 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01011 Cpe-Chr11:8526798 Cpe15g00219 Cpe-Chr15:1895199 1.95E-38 dispersed
Cpe11g01011 Cpe-Chr11:8526798 Cpe07g00979 Cpe-Chr7:8848659 2.64E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01011 - - csv:101221844 540.806