Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g01018 | ATGGCGAATAAAGGCAGAGATGGTGAGCACTCGAGTTTACTCGACGGGAAGTACGAATTCGGCCGTCTTTTAGGGCACGGGACCTTCGCTAAGGTTTACCATGCCCGGAATCTGCAGACGGGGAAGAACGTTGCGATGAAAGTTGTTGGGAAGGAGAAGATCATCAAAATCGGCATGATGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTTGCGATGGAGCTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGTGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGTGGTGTTTACCACCGCGATCTGAAACCGGAAAATCTGCTACTCGATCAGGACGGAAACCTTAAGGTCACCGATTTTGGCCTCACCGCCTTCTCGGAGCATTTGAAGCAAGACGGACTGTTGCACACGACATGCGGAACTCCGGCGTACGTTGCGCCGGAGGTTATTGGAAAGCAGGGATACGACGGGGCTAAGGCTGATCTCTGGTCCTGTGGAGTCATCCTGTACGTTCTTCTTGCCGGATACCTTCCATTCCAGGACGACAATATGGTGGCGATGTACCGGAAGATTTACAGAGGCGATTTCAGGTGTCCACCGTGGTTCTCTCCCGAAGCTCGCCGCCTAGTCACGAAGCTTCTAGATCCGAATCCGGTGACCAGAGTCGGTATCGCGAAGATCACATCGTCGTTATGGTTCAAGAAATCGATACCGAAGAGTGTGATTACGAAGGAGCAAGAAGAAATGGAGGAGAATTTGGCGAAATCGAATCAACCGGCGGAAACGTTGAACGCATTCCACATAATATCTCTATCGGAAGGGTTTGATTTGTCGCCGTTGTTCGAAGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCTTGACTTCATCGCCGGCGAGCAGTGTGATATCGAAACTTGAGGAAGTGGCGAAGGCAGTGAAGTTCGATGTGAGGAAGAGCGAGTCGTGGGTCCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAACTAGCGATTGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGACACTTTAGAGTACAATCAATTCTGCAGGGAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACTGGGAGCTCGACCCGAGCTTGA | 1299 | 50.65 | MANKGRDGEHSSLLDGKYEFGRLLGHGTFAKVYHARNLQTGKNVAMKVVGKEKIIKIGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIVKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDQDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPVTRVGIAKITSSLWFKKSIPKSVITKEQEEMEENLAKSNQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFLTSSPASSVISKLEEVAKAVKFDVRKSESWVRLQGQEKGRKGKLAIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCREELRPALKDIVWTSPTGSSTRA | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8572895 | 8574193 | + | Cp4.1LG11g10120.1 | Cpe11g01018 | 477812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g01018 | 432 | Pfam | Protein kinase domain | 18 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe11g01018 | 432 | Gene3D | Kinase associated domain 1, KA1 | 300 | 423 | - | - | |
Cpe11g01018 | 432 | Pfam | NAF domain | 300 | 359 | IPR004041 | GO:0007165 | |
Cpe11g01018 | 432 | Gene3D | Phosphorylase Kinase; domain 1 | 15 | 99 | - | - | |
Cpe11g01018 | 432 | CDD | CIPK_C | 303 | 418 | - | - | |
Cpe11g01018 | 432 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 136 | 148 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe11g01018 | 432 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 51 | IPR017441 | GO:0005524 | |
Cpe11g01018 | 432 | CDD | STKc_SnRK3 | 17 | 271 | - | - | |
Cpe11g01018 | 432 | ProSiteProfiles | NAF domain profile. | 297 | 321 | IPR018451 | GO:0007165 | |
Cpe11g01018 | 432 | ProSiteProfiles | Protein kinase domain profile. | 18 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe11g01018 | 432 | PANTHER | - | 10 | 425 | - | - | |
Cpe11g01018 | 432 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 299 | - | - | |
Cpe11g01018 | 432 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 10 | 425 | - | - | |
Cpe11g01018 | 432 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 284 | IPR011009 | - | |
Cpe11g01018 | 432 | SMART | serkin_6 | 18 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01247 | Cpe-Chr4:10411161 | Cpe11g01018 | Cpe-Chr11:8572895 | 0 | dispersed | |
Cpe11g01018 | Cpe-Chr11:8572895 | Cpe20g00467 | Cpe-Chr20:2703149 | 0 | dispersed | |
Cpe19g01074 | Cpe-Chr19:7327724 | Cpe11g01018 | Cpe-Chr11:8572895 | 9.63E-178 | dispersed | |
Cpe11g01018 | Cpe-Chr11:8572895 | Cpe18g00559 | Cpe-Chr18:6124703 | 0 | wgd | |
Cpe11g01018 | Cpe-Chr11:8572895 | Cpe07g00984 | Cpe-Chr7:8907079 | 0 | wgd | |
Cpe11g01018 | Cpe-Chr11:8572895 | Cpe07g01155 | Cpe-Chr7:10112001 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62724 | PF00069 | Pkinase | 3.10E-71 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g01018 | - | K07198 | csv:101208458 | 778.089 |