Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01018 ATGGCGAATAAAGGCAGAGATGGTGAGCACTCGAGTTTACTCGACGGGAAGTACGAATTCGGCCGTCTTTTAGGGCACGGGACCTTCGCTAAGGTTTACCATGCCCGGAATCTGCAGACGGGGAAGAACGTTGCGATGAAAGTTGTTGGGAAGGAGAAGATCATCAAAATCGGCATGATGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTTGCGATGGAGCTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGTGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGTGGTGTTTACCACCGCGATCTGAAACCGGAAAATCTGCTACTCGATCAGGACGGAAACCTTAAGGTCACCGATTTTGGCCTCACCGCCTTCTCGGAGCATTTGAAGCAAGACGGACTGTTGCACACGACATGCGGAACTCCGGCGTACGTTGCGCCGGAGGTTATTGGAAAGCAGGGATACGACGGGGCTAAGGCTGATCTCTGGTCCTGTGGAGTCATCCTGTACGTTCTTCTTGCCGGATACCTTCCATTCCAGGACGACAATATGGTGGCGATGTACCGGAAGATTTACAGAGGCGATTTCAGGTGTCCACCGTGGTTCTCTCCCGAAGCTCGCCGCCTAGTCACGAAGCTTCTAGATCCGAATCCGGTGACCAGAGTCGGTATCGCGAAGATCACATCGTCGTTATGGTTCAAGAAATCGATACCGAAGAGTGTGATTACGAAGGAGCAAGAAGAAATGGAGGAGAATTTGGCGAAATCGAATCAACCGGCGGAAACGTTGAACGCATTCCACATAATATCTCTATCGGAAGGGTTTGATTTGTCGCCGTTGTTCGAAGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCTTGACTTCATCGCCGGCGAGCAGTGTGATATCGAAACTTGAGGAAGTGGCGAAGGCAGTGAAGTTCGATGTGAGGAAGAGCGAGTCGTGGGTCCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAACTAGCGATTGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGACACTTTAGAGTACAATCAATTCTGCAGGGAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACTGGGAGCTCGACCCGAGCTTGA 1299 50.65 MANKGRDGEHSSLLDGKYEFGRLLGHGTFAKVYHARNLQTGKNVAMKVVGKEKIIKIGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIVKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDQDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPVTRVGIAKITSSLWFKKSIPKSVITKEQEEMEENLAKSNQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFLTSSPASSVISKLEEVAKAVKFDVRKSESWVRLQGQEKGRKGKLAIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCREELRPALKDIVWTSPTGSSTRA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8572895 8574193 + Cp4.1LG11g10120.1 Cpe11g01018 477812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01018 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01018 432 Gene3D Kinase associated domain 1, KA1 300 423 - -
Cpe11g01018 432 Pfam NAF domain 300 359 IPR004041 GO:0007165
Cpe11g01018 432 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Cpe11g01018 432 CDD CIPK_C 303 418 - -
Cpe11g01018 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cpe11g01018 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Cpe11g01018 432 CDD STKc_SnRK3 17 271 - -
Cpe11g01018 432 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Cpe11g01018 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01018 432 PANTHER - 10 425 - -
Cpe11g01018 432 Gene3D Transferase(Phosphotransferase) domain 1 100 299 - -
Cpe11g01018 432 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 425 - -
Cpe11g01018 432 SUPERFAMILY Protein kinase-like (PK-like) 15 284 IPR011009 -
Cpe11g01018 432 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01247 Cpe-Chr4:10411161 Cpe11g01018 Cpe-Chr11:8572895 0 dispersed
Cpe11g01018 Cpe-Chr11:8572895 Cpe20g00467 Cpe-Chr20:2703149 0 dispersed
Cpe19g01074 Cpe-Chr19:7327724 Cpe11g01018 Cpe-Chr11:8572895 9.63E-178 dispersed
Cpe11g01018 Cpe-Chr11:8572895 Cpe18g00559 Cpe-Chr18:6124703 0 wgd
Cpe11g01018 Cpe-Chr11:8572895 Cpe07g00984 Cpe-Chr7:8907079 0 wgd
Cpe11g01018 Cpe-Chr11:8572895 Cpe07g01155 Cpe-Chr7:10112001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62724 PF00069 Pkinase 3.10E-71 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01018 - K07198 csv:101208458 778.089