Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01019 ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCAACCACCGGAGACCGACGACTCTCAACTCCACCACCACCTTCAGACTTCCGTCTTCCATCCACCTTCCTTCTCCTCTGATGATTTCCTCGACCAAATCCTCTCCACCGCTCCCTCTCCCTGGGAACTCCCCATCGGACTTCCAAATCCCCACTCCAACCTCCCTCCTCAGCCACCGCCGCCATCTAATCCTGACAATGTCGCGTTTCAGATCGGCGACGCAACTCCAGCGGGCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCACCGTCTCCGATGATTCCAGTCTCCTTCCAATGCTTAGTAACGACGTCGTTGATGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTAACCACGGCTCTATCATTCCCTCAATCTTCAACGAATTCACCGGGTTTCTGAACGCCTCTGGTTCCAGCCAGAACCAGAATCAATTTCAGGCAGGAAATTCAAATTCACAGAAACAGAACTTCATAGCTCCGGTATCAATCAATCCTCCACCTCCGTCTGTCCCTGGCTCCGGCGGTGGTTCTGCAACATCAGCTCAGCCCCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAACGAATTGCAGAGAGAATGAAAGGTCTGCAAGAACTGGTTCCCAACGCGAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTTCAGCTTCAAGTCAAAGTTCTGAGCGTCAGCAGATTGGGCGGTGCCACCGCCGCCATGCCTTCCCTTCTACCCGATTCTTCCACTCAGACCTCTACCGGAGGTCCGACGAGTAACGACACGATGGCGATAACGGAGAACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCTGCTGCCACGTGTCACAGCCGCCCCATCACGACATCGAAGGGCGGAGGAGATGCCCCCACTTCTCCCAGCCTCTCGGCGTTGACCAGTCAGTCAACCGTCTTGGGTAACGGCACCGTCGACAGAGCGGTCAGAGACTCTGCCTCCGTTTCGCGGCCGTGA 1206 54.81 MRLTNSLPDLHSHRRNQPPETDDSQLHHHLQTSVFHPPSFSSDDFLDQILSTAPSPWELPIGLPNPHSNLPPQPPPPSNPDNVAFQIGDATPAGKMAMALLQQQLLMSRGIATVSDDSSLLPMLSNDVVDVEGSSSFKCPNPINHGSIIPSIFNEFTGFLNASGSSQNQNQFQAGNSNSQKQNFIAPVSINPPPPSVPGSGGGSATSAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLLPDSSTQTSTGGPTSNDTMAITENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITTSKGGGDAPTSPSLSALTSQSTVLGNGTVDRAVRDSASVSRP 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8583989 8587392 - Cp4.1LG11g10230.1 Cpe11g01019 477813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01019 401 SMART finulus 226 275 IPR011598 GO:0046983
Cpe11g01019 401 Pfam Helix-loop-helix DNA-binding domain 225 270 IPR011598 GO:0046983
Cpe11g01019 401 MobiDBLite consensus disorder prediction 184 229 - -
Cpe11g01019 401 MobiDBLite consensus disorder prediction 359 386 - -
Cpe11g01019 401 Gene3D - 215 277 IPR036638 GO:0046983
Cpe11g01019 401 MobiDBLite consensus disorder prediction 359 401 - -
Cpe11g01019 401 MobiDBLite consensus disorder prediction 7 27 - -
Cpe11g01019 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 278 IPR036638 GO:0046983
Cpe11g01019 401 MobiDBLite consensus disorder prediction 57 82 - -
Cpe11g01019 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 362 - -
Cpe11g01019 401 MobiDBLite consensus disorder prediction 1 27 - -
Cpe11g01019 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Cpe11g01019 401 MobiDBLite consensus disorder prediction 59 81 - -
Cpe11g01019 401 PANTHER TRANSCRIPTION FACTOR BHLH69 37 362 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g01154 Cpe11g01019 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01244 Cpe-Chr4:10387802 Cpe11g01019 Cpe-Chr11:8583989 3.08E-76 dispersed
Cpe05g00013 Cpe-Chr5:54999 Cpe11g01019 Cpe-Chr11:8583989 2.39E-20 dispersed
Cpe11g01019 Cpe-Chr11:8583989 Cpe12g01053 Cpe-Chr12:8773170 1.73E-47 dispersed
Cpe12g00813 Cpe-Chr12:7291377 Cpe11g01019 Cpe-Chr11:8583989 2.73E-16 dispersed
Cpe11g01019 Cpe-Chr11:8583989 Cpe18g00556 Cpe-Chr18:6104913 1.82E-99 wgd
Cpe11g01019 Cpe-Chr11:8583989 Cpe07g01154 Cpe-Chr7:10099747 1.82E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50269 PF00010 HLH 4.30E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01019 - - csv:101222794 551.977