Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe11g01064 | ATGTCAAGCTGCATCAACAGTGCACAAGAGCAGCTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATATCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCAGCTTTCCAATCTCTCTCATGGCAGAATTCTCAGGCATCAAACCACACCTACAGTGGGCTTGCAGCTGATCATTACAGAGCTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAGAAACCCTACAAATGATGATCAAAGGATCATCAATCGAGCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGAAACCAACAATCTCCAAGCTAAGACGAAGAACGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 582 | 43.99 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHTYSGLAADHYRAELGSSSKCNNKMKMRAPIRNPTNDDQRIINRAPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQAKTKNDGSEKHLMSVPGLHY | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8932872 | 8936484 | + | Cp4.1LG11g10670.1 | Cpe11g01064 | 477858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe11g01064 | 193 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 180 | - | - | |
| Cpe11g01064 | 193 | Pfam | YABBY protein | 8 | 165 | IPR006780 | GO:0007275 | |
| Cpe11g01064 | 193 | SUPERFAMILY | HMG-box | 105 | 158 | IPR036910 | - | |
| Cpe11g01064 | 193 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 180 | IPR006780 | GO:0007275 | |
| Cpe11g01064 | 193 | Gene3D | High mobility group box domain | 103 | 178 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00455 | Cpe-Chr5:2635623 | Cpe11g01064 | Cpe-Chr11:8932872 | 7.45E-61 | dispersed | |
| Cpe08g00754 | Cpe-Chr8:6069752 | Cpe11g01064 | Cpe-Chr11:8932872 | 1.80E-44 | dispersed | |
| Cpe11g00017 | Cpe-Chr11:100544 | Cpe11g01064 | Cpe-Chr11:8932872 | 1.80E-33 | dispersed | |
| Cpe11g01064 | Cpe-Chr11:8932872 | Cpe13g00219 | Cpe-Chr13:1656187 | 3.65E-43 | dispersed | |
| Cpe16g00831 | Cpe-Chr16:7999125 | Cpe11g01064 | Cpe-Chr11:8932872 | 2.66E-22 | dispersed | |
| Cpe11g01064 | Cpe-Chr11:8932872 | Cpe18g00498 | Cpe-Chr18:5778295 | 2.97E-73 | wgd | |
| Cpe11g01064 | Cpe-Chr11:8932872 | Cpe04g01191 | Cpe-Chr4:10087072 | 3.17E-77 | wgd | |
| Cpe11g01064 | Cpe-Chr11:8932872 | Cpe07g01105 | Cpe-Chr7:9727251 | 3.40E-122 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50273 | PF04690 | YABBY | 2.10E-69 | CL0114 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe11g01064 | K25796 | - | csv:101219877 | 362.459 |