Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01064 ATGTCAAGCTGCATCAACAGTGCACAAGAGCAGCTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATATCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCAGCTTTCCAATCTCTCTCATGGCAGAATTCTCAGGCATCAAACCACACCTACAGTGGGCTTGCAGCTGATCATTACAGAGCTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAGAAACCCTACAAATGATGATCAAAGGATCATCAATCGAGCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGAAACCAACAATCTCCAAGCTAAGACGAAGAACGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 582 43.99 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHTYSGLAADHYRAELGSSSKCNNKMKMRAPIRNPTNDDQRIINRAPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQAKTKNDGSEKHLMSVPGLHY 193
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 8932872 8936484 + Cp4.1LG11g10670.1 Cpe11g01064 477858
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01064 193 PANTHER AXIAL REGULATOR YABBY 5 1 180 - -
Cpe11g01064 193 Pfam YABBY protein 8 165 IPR006780 GO:0007275
Cpe11g01064 193 SUPERFAMILY HMG-box 105 158 IPR036910 -
Cpe11g01064 193 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Cpe11g01064 193 Gene3D High mobility group box domain 103 178 IPR036910 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00455 Cpe-Chr5:2635623 Cpe11g01064 Cpe-Chr11:8932872 7.45E-61 dispersed
Cpe08g00754 Cpe-Chr8:6069752 Cpe11g01064 Cpe-Chr11:8932872 1.80E-44 dispersed
Cpe11g00017 Cpe-Chr11:100544 Cpe11g01064 Cpe-Chr11:8932872 1.80E-33 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe13g00219 Cpe-Chr13:1656187 3.65E-43 dispersed
Cpe16g00831 Cpe-Chr16:7999125 Cpe11g01064 Cpe-Chr11:8932872 2.66E-22 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe18g00498 Cpe-Chr18:5778295 2.97E-73 wgd
Cpe11g01064 Cpe-Chr11:8932872 Cpe04g01191 Cpe-Chr4:10087072 3.17E-77 wgd
Cpe11g01064 Cpe-Chr11:8932872 Cpe07g01105 Cpe-Chr7:9727251 3.40E-122 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50273 PF04690 YABBY 2.10E-69 CL0114 Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01064 K25796 - csv:101219877 362.459