Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01069 ATGGCGCCATCGAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTCTCCGAAATTCGCCACCCTCTTCTGAAGAGAAGAGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCGTACGATCAGGCCGCCGTGTTAATGAGCGGTAGAAACGCAAAAACCAACTTTCCGATGAGCGAAACAGCGGCGCCAGAATTAGAAAAACTCAACAACATCACAACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCATCGCCATCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACAGTTCATTTGGGAAAAGAAAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCGCCGCTTCCGGCGGCAATGACGACGGTGGGAGGTTGTGGAATAGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGGAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCACGAGGAAGCAAAGCTAAGCCCTTTCTAA 690 51.16 MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSSSSSSTAAASGGNDDGGRLWNSKKSGGASMAGGGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8969543 8971201 + Cp4.1LG11g10640.1 Cpe11g01069 477863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01069 229 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 214 - -
Cpe11g01069 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 214 - -
Cpe11g01069 229 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cpe11g01069 229 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Cpe11g01069 229 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cpe11g01069 229 MobiDBLite consensus disorder prediction 141 186 - -
Cpe11g01069 229 MobiDBLite consensus disorder prediction 141 159 - -
Cpe11g01069 229 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cpe11g01069 229 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cpe11g01069 229 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cpe11g01069 229 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Cpe11g01069 229 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01183 Cpe11g01069 CCT
Cpe04g01183 Cpe11g01069 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00343 Cpe-Chr6:1904800 Cpe11g01069 Cpe-Chr11:8969543 1.20E-71 dispersed
Cpe11g00306 Cpe-Chr11:1659772 Cpe11g01069 Cpe-Chr11:8969543 1.09E-34 dispersed
Cpe11g01069 Cpe-Chr11:8969543 Cpe12g00767 Cpe-Chr12:6986397 6.01E-32 dispersed
Cpe11g01069 Cpe-Chr11:8969543 Cpe02g00453 Cpe-Chr2:2565074 2.37E-27 wgd
Cpe11g01069 Cpe-Chr11:8969543 Cpe04g01183 Cpe-Chr4:10052860 1.32E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50274 PF00847 AP2 3.20E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01069 - - bhj:120080144 324.709