Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01118 ATGGGGGAAGAAGATTCCGTAGGTGCACCTCAGAAGAAGGCTCAATCGGAGGGTGCTGCGTTGAGTAATTCTTCGTCATCGGATATTCCATCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCAGACCCGCATTCACAGCCACAGGCTCCATTAGTAGCTCAAAATCTTCCGCAAGCTCCGCCAAAGCCACCGCCGCAGATGGTGGCGGCGTCGATCGCATCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCCATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATACTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAACCCAAATGCGTTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAGTCGGGTTGTCTAAAGAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCCGAAAATTGTAAATGTATGGACTGCAAGAATTTTGAGGGAAGTGAGGAGAGACAAGCTCTTTTCCATGGAGATCATGGTAACAACATAGCATTCATTCAACAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGCCAAGAACTCTACTTTGGACTGACAGCCAAGGAACTACCCGCTCATAGGCCAGTGCCATTTCAACAGGCAAATCATATCAGAGTCGCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCGGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACATATCAAGACCAAACAAATGCCACAGAAAAGCAATCTGATGCCCAGACAGAAACTTCTGCTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCGAACCAGGCTGATAAAACAACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACGTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTACTGCTTCCCACAATAGATTAATGGGTCCTGGCTGCAGCACGTCTTCACAGCTGCCTCACGGACGAGACACGTCAGAGGTCTATGCGGAGCAGGAGAGGATCGTCCTTACAAAGCTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGCGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCGCGACAAATTCTACAACTGAAACTCAGAGTAATATTGGTCAACTCAACAATAAAGTTACAAAATCTTCGATTCCACCGTCGGTGAAGACGTCACAGACGGTAACTACAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1770 46.5 MGEEDSVGAPQKKAQSEGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSDPHSQPQAPLVAQNLPQAPPKPPPQMVAASIASLAPHSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDTARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGLTAKELPAHRPVPFQQANHIRVAAPPLPSFPIAGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTYQDQTNATEKQSDAQTETSAASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMATASHNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKLRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGATNSTTETQSNIGQLNNKVTKSSIPPSVKTSQTVTTAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9298119 9304850 - Cp4.1LG11g11100.1 Cpe11g01118 477912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01118 589 MobiDBLite consensus disorder prediction 44 65 - -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 374 400 - -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 374 448 - -
Cpe11g01118 589 PANTHER TESMIN/TSO1-RELATED 54 576 IPR028307 -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 16 32 - -
Cpe11g01118 589 SMART CXC_2 117 157 IPR033467 -
Cpe11g01118 589 SMART CXC_2 202 243 IPR033467 -
Cpe11g01118 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Cpe11g01118 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 401 417 - -
Cpe11g01118 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 54 576 - -
Cpe11g01118 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 1 119 - -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 418 432 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe11g01118 Cpe18g00421 CCT
Cpe11g01118 Cpe18g00421 ECH
Cpe07g01018 Cpe11g01118 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01455 Cpe-Chr3:11604916 Cpe11g01118 Cpe-Chr11:9298119 1.19E-31 dispersed
Cpe11g01118 Cpe-Chr11:9298119 Cpe12g00188 Cpe-Chr12:1201487 5.68E-34 dispersed
Cpe11g01118 Cpe-Chr11:9298119 Cpe18g00421 Cpe-Chr18:5355816 0 wgd
Cpe11g01118 Cpe-Chr11:9298119 Cpe04g01122 Cpe-Chr4:9699835 1.57E-23 wgd
Cpe11g01118 Cpe-Chr11:9298119 Cpe07g01018 Cpe-Chr7:9222387 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50278 PF03638 TCR 3.10E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01118 - - csv:101211978 1041.18