Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01118 ATGGGGGAAGAAGATTCCGTAGGTGCACCTCAGAAGAAGGCTCAATCGGAGGGTGCTGCGTTGAGTAATTCTTCGTCATCGGATATTCCATCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCAGACCCGCATTCACAGCCACAGGCTCCATTAGTAGCTCAAAATCTTCCGCAAGCTCCGCCAAAGCCACCGCCGCAGATGGTGGCGGCGTCGATCGCATCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCCATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATACTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAACCCAAATGCGTTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAGTCGGGTTGTCTAAAGAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCCGAAAATTGTAAATGTATGGACTGCAAGAATTTTGAGGGAAGTGAGGAGAGACAAGCTCTTTTCCATGGAGATCATGGTAACAACATAGCATTCATTCAACAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGCCAAGAACTCTACTTTGGACTGACAGCCAAGGAACTACCCGCTCATAGGCCAGTGCCATTTCAACAGGCAAATCATATCAGAGTCGCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCGGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACATATCAAGACCAAACAAATGCCACAGAAAAGCAATCTGATGCCCAGACAGAAACTTCTGCTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCGAACCAGGCTGATAAAACAACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACGTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTACTGCTTCCCACAATAGATTAATGGGTCCTGGCTGCAGCACGTCTTCACAGCTGCCTCACGGACGAGACACGTCAGAGGTCTATGCGGAGCAGGAGAGGATCGTCCTTACAAAGCTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGCGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCGCGACAAATTCTACAACTGAAACTCAGAGTAATATTGGTCAACTCAACAATAAAGTTACAAAATCTTCGATTCCACCGTCGGTGAAGACGTCACAGACGGTAACTACAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1770 46.5 MGEEDSVGAPQKKAQSEGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSDPHSQPQAPLVAQNLPQAPPKPPPQMVAASIASLAPHSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDTARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGLTAKELPAHRPVPFQQANHIRVAAPPLPSFPIAGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTYQDQTNATEKQSDAQTETSAASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMATASHNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKLRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGATNSTTETQSNIGQLNNKVTKSSIPPSVKTSQTVTTAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9298119 9304850 - Cp4.1LG11g11100.1 Cpe11g01118 477912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01118 589 MobiDBLite consensus disorder prediction 44 65 - -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 374 400 - -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 374 448 - -
Cpe11g01118 589 PANTHER TESMIN/TSO1-RELATED 54 576 IPR028307 -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 16 32 - -
Cpe11g01118 589 SMART CXC_2 117 157 IPR033467 -
Cpe11g01118 589 SMART CXC_2 202 243 IPR033467 -
Cpe11g01118 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Cpe11g01118 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 401 417 - -
Cpe11g01118 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 54 576 - -
Cpe11g01118 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 1 119 - -
Cpe11g01118 589 MobiDBLite consensus disorder prediction 418 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01118 - - - csv:101211978 1041.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe11g01118 Cpe18g00421 CCT
Cpe11g01118 Cpe18g00421 ECH
Cpe07g01018 Cpe11g01118 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01455 Cpe-Chr3:11604916 Cpe11g01118 Cpe-Chr11:9298119 1.19E-31 dispersed
Cpe11g01118 Cpe-Chr11:9298119 Cpe12g00188 Cpe-Chr12:1201487 5.68E-34 dispersed
Cpe11g01118 Cpe-Chr11:9298119 Cpe18g00421 Cpe-Chr18:5355816 0 wgd
Cpe11g01118 Cpe-Chr11:9298119 Cpe04g01122 Cpe-Chr4:9699835 1.57E-23 wgd
Cpe11g01118 Cpe-Chr11:9298119 Cpe07g01018 Cpe-Chr7:9222387 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g01018 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.9 9.9e-138 487.6
Cpe11g01118 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.2 1.9e-136 483.4
Cpe11g01118 CCT,CST,ECH 93 526 CPP Transcription Factor Family AT4G29000 61.8 8.4e-146 514.6
Cpe07g01018 CCT,CST,ECH 99 526 CPP Transcription Factor Family AT4G29000 62.2 9.2e-145 511.1
Cpe18g00421 CCT,ECH 25 538 CPP Transcription Factor Family AT4G29000 52.7 4.0e-140 495.7
Cpe04g01123 CST 1 315 CPP Transcription Factor Family AT4G29000 54.0 2.6e-83 307.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50278 PF03638 TCR 3.10E-12 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g01118 Cpe_Chr11 FPKM 2.343262 1.742544 0.653121 1.904378 1.337966 1.359276 1.633475 0.338609 0.257517 0.361227
Cpe11g01118 Cpe_Chr00 FPKM 17.417061 14.691234 14.342245 13.910554 8.562871 11.397471 9.771182 10.464496 10.600554 10.99777