Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01143 ATGAAGATCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTGCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTACTGAACCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAAGCAGAGATTTCAGATTGTAAGGAACTTGATGTCGATTTCTCATTGGAAGATCTTGAGACTGTGAATGGTATCGGGAAAGGAAGTGGTGGTGTAGTGCAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAACAGATCGTGCAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATAGTGGTTTGTTACCATTCTTTCTACCATAATGGTGCAATTTCTCTGGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGACATAGTCAGACAAGTCCAAACAATTCTGGAACCATATCTTGCAGTTGTCTGTAAACAGGTTCTACAAGGTCTTGTTTATTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTTAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCTAGTTCTATGGGTCAGAGAGATACATTTGTGGGAACTTACAATTACATGTCGCCTGAGCGAATTAGCGGCGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGCATGGTTGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTGCTTGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCTCCACCGGATCAATTCTCCCCTGAGTTCTGTTCCTTCGTATCCGCTTGCATTAAAAAGGACCCTAAAGAAAGATCAGCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCCAGATAA 1065 42.44 MKIKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAEISDCKELDVDFSLEDLETVNGIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADIVRQVQTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSASLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9470532 9473926 - Cp4.1LG11g11440.1 Cpe11g01143 477937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01143 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Cpe11g01143 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cpe11g01143 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 353 - -
Cpe11g01143 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cpe11g01143 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Cpe11g01143 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Cpe11g01143 354 CDD PKc_MAPKK_plant_like 67 333 - -
Cpe11g01143 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01143 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01143 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 353 - -
Cpe11g01143 354 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01073 Cpe-Chr7:9515287 Cpe11g01143 Cpe-Chr11:9470532 5.31E-147 dispersed
Cpe11g01143 Cpe-Chr11:9470532 Cpe18g00340 Cpe-Chr18:4849508 7.06E-159 dispersed
Cpe03g00581 Cpe-Chr3:3470754 Cpe11g01143 Cpe-Chr11:9470532 1.95E-80 transposed
Cpe11g01143 Cpe-Chr11:9470532 Cpe07g01036 Cpe-Chr7:9324987 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62730 PF00069 Pkinase 4.30E-65 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01143 K04368 - csv:101218848 675.241