Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01144 ATGTCGTGGCAAGTTTACGTCGACGATCATTTGATGTGCGATATTGAGGGCAATCACCTCTCATCTGCAGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGAAACTTTCCCCAAGTTCAAGCCTGAAGAAATTGCTGCCATCATGAATGACTTCAATGAGCCCGGGACGCTTGCTCCAACTGGTTTGTATCTTGGTGGCTCAAAGTATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGGGAACCGCCTATTGTGTACAAGTCTATGGACTCTTGA 375 49.33 MSWQVYVDDHLMCDIEGNHLSSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFNEPGTLAPTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGEPPIVYKSMDS 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9475430 9477423 - Cp4.1LG11g11500.1 Cpe11g01144 477938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01144 124 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cpe11g01144 124 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cpe11g01144 124 Pfam Profilin 1 114 IPR005455 GO:0003779
Cpe11g01144 124 SMART prof_2 1 124 IPR005455 GO:0003779
Cpe11g01144 124 PANTHER PROFILIN 1 118 - -
Cpe11g01144 124 CDD PROF 2 114 IPR005455 GO:0003779
Cpe11g01144 124 Gene3D Dynein light chain 2a, cytoplasmic 1 122 - -
Cpe11g01144 124 SUPERFAMILY Profilin (actin-binding protein) 2 115 IPR036140 -
Cpe11g01144 124 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cpe11g01144 124 PANTHER PROFILIN 1 118 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g01035 Cpe11g01144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01144 Cpe-Chr11:9475430 Cpe12g00643 Cpe-Chr12:6305539 3.45E-70 dispersed
Cpe11g01144 Cpe-Chr11:9475430 Cpe11g01145 Cpe-Chr11:9479625 1.00E-64 tandem
Cpe11g01144 Cpe-Chr11:9475430 Cpe02g01699 Cpe-Chr2:13966508 5.54E-62 wgd
Cpe11g01144 Cpe-Chr11:9475430 Cpe03g01090 Cpe-Chr3:9000799 5.66E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01144 K05759 - cit:102628130 207.608