Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01155 ATGTCGTGGCAAACATATGTCGATGACCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATTGGCCACGATGGCAGCGTCTGGGCTCAGAGCACCTCATTTCCTCAGTACAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCTGGTTATCTTGCACCTACTGGATTACACCTTGCAGGTACAAAGTACATGGTTATCCAAGGCGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGGCAAGCTCTAGTTTTTGGCATTTATGAAGAACCTGTTACTCCAGGGCAGTGCAACATGGTCGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.0 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSTSFPQYKPEEITGIMKDFDEPGYLAPTGLHLAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9529439 9530590 - Cp4.1LG11g11600.1 Cpe11g01155 477949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01155 133 PANTHER PROFILIN 1 133 - -
Cpe11g01155 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cpe11g01155 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cpe11g01155 133 SMART prof_2 1 133 IPR005455 GO:0003779
Cpe11g01155 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cpe11g01155 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cpe11g01155 133 CDD PROF 2 132 IPR005455 GO:0003779
Cpe11g01155 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cpe11g01155 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01155 K05759 PFN; profilin - twl:120006331 257.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01145 Cpe-Chr11:9479625 Cpe11g01155 Cpe-Chr11:9529439 8.40E-97 dispersed
Cpe11g01155 Cpe-Chr11:9529439 Cpe17g00524 Cpe-Chr17:4370964 6.88E-82 dispersed
Cpe11g01155 Cpe-Chr11:9529439 Cpe07g01035 Cpe-Chr7:9318854 1.36E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT2G37620 96.3 6.9e-215 743.4
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 5.9e-214 740.3
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.0e-213 739.6
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.3e-213 739.2
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT2G37620 95.5 2.9e-213 738.0
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.8e-213 737.6
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 5.0e-213 737.3
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-212 734.9
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.5e-212 734.9
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT2G37620 95.2 2.5e-212 734.9
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-212 734.2
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.2e-212 734.2
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.2 7.2e-212 733.4
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT2G37620 93.3 7.1e-103 371.3
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT2G37620 97.8 2.1e-102 369.8
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.5e-214 742.3
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 7.7e-214 740.0
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 3.8e-213 737.6
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.0 6.5e-213 736.9
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.4e-212 735.7
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT5G59370 95.8 1.9e-212 735.3
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 2.5e-212 734.9
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT5G59370 95.8 3.2e-212 734.6
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT5G59370 95.8 7.2e-212 733.4
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT5G59370 95.5 4.6e-211 730.7
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.0e-210 729.6
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.0e-210 729.6
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT5G59370 94.4 3.9e-210 727.6
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT5G59370 98.4 2.1e-102 369.8
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT5G59370 90.7 9.7e-100 360.9
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 6.9e-215 743.4
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 3.4e-214 741.1
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.7e-213 738.8
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.3 2.9e-213 738.0
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 6.5e-213 736.9
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.0 8.5e-213 736.5
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT3G46520 96.0 1.4e-212 735.7
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT3G46520 96.0 3.2e-212 734.6
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT3G46520 95.8 7.2e-212 733.4
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT3G46520 95.8 2.1e-211 731.9
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 4.6e-211 730.7
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 4.6e-211 730.7
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT3G46520 94.7 1.8e-210 728.8
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT3G46520 98.4 2.1e-102 369.8
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT3G46520 91.2 4.3e-100 362.1
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT3G12110 96.8 4.1e-215 744.2
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 2.6e-214 741.5
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.4e-214 741.1
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 4.5e-214 740.7
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 7.7e-214 740.0
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT3G12110 96.3 7.7e-214 740.0
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 7.7e-214 740.0
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.0e-213 739.6
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 1.3e-213 739.2
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.8e-213 737.6
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT3G12110 95.5 1.1e-212 736.1
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.2e-212 734.6
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 7.2e-212 733.4
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT3G12110 98.9 9.3e-103 370.9
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT3G12110 92.3 6.1e-102 368.2
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT3G18780 93.1 5.7e-209 723.8
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.6
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.8e-208 721.5
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 3.7e-208 721.1
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT3G18780 91.8 4.8e-208 720.7
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 6.3e-208 720.3
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 6.3e-208 720.3
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.4e-207 719.2
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.2
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT3G18780 91.5 1.8e-207 718.8
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 4.1e-207 717.6
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 1.2e-206 716.1
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT3G18780 91.2 2.6e-206 714.9
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-101 367.1
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT3G18780 94.0 2.2e-99 359.8
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT1G49240 93.4 2.0e-209 725.3
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.3e-209 724.2
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.3 9.7e-209 723.0
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.3e-208 722.6
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.2e-208 721.8
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.2e-208 721.8
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.8e-208 720.7
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.8e-208 720.7
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT1G49240 91.8 6.3e-208 720.3
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT1G49240 91.5 1.1e-207 719.5
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT1G49240 91.2 9.1e-207 716.5
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT1G49240 91.2 2.6e-206 714.9
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT1G49240 91.0 5.9e-206 713.8
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT1G49240 92.3 1.3e-101 367.1
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT1G49240 94.5 7.4e-100 361.3
Cpe10g00351 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Cpe16g00072 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Cpe19g00544 CCT,CST 14 390 Cytoskeleton Gene Families AT5G09810 98.4 9.7e-217 749.6
Cpe04g00400 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 5.3e-215 743.8
Cpe15g00255 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.4e-214 741.1
Cpe05g00918 . 3 379 Cytoskeleton Gene Families AT5G09810 95.2 1.1e-212 736.1
Cpe01g02297 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.4e-212 735.7
Cpe16g00608 . 5 381 Cytoskeleton Gene Families AT5G09810 95.5 2.5e-212 734.9
Cpe01g01096 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-212 734.6
Cpe03g00368 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-212 734.6
Cpe11g00097 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-212 734.6
Cpe10g00886 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 4.2e-212 734.2
Cpe13g00859 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 7.2e-212 733.4
Cpe19g00354 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.2e-211 732.6
Cpe01g00187 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.0 3.6e-211 731.1
Cpe05g01072 . 10 203 Cytoskeleton Gene Families AT5G09810 97.4 1.2e-105 380.6
Cpe05g01071 . 1 182 Cytoskeleton Gene Families AT5G09810 99.5 4.2e-103 372.1
Cpe12g00643 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 76.3 2.7e-57 218.4
Cpe07g01035 CST 1 132 Cytoskeleton Gene Families AT2G19760 77.3 1.3e-56 216.1
Cpe11g01145 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.0e-56 214.9
Cpe11g01155 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.0e-56 214.9
Cpe17g00524 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.9e-55 212.2
Cpe03g01090 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 73.6 1.6e-54 209.1
Cpe02g01699 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 2.4e-53 205.3
Cpe11g01144 CST 1 122 Cytoskeleton Gene Families AT2G19760 72.1 3.0e-48 188.3
Cpe12g00643 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 7.9e-57 216.9
Cpe17g00524 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 1.5e-55 212.6
Cpe07g01035 CST 160 290 Cytoskeleton Gene Families AT4G29350 75.6 5.6e-55 210.7
Cpe11g01145 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.3e-54 209.5
Cpe11g01155 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.3e-54 209.5
Cpe03g01090 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.8 3.1e-53 204.9
Cpe02g01699 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 69.5 1.0e-51 199.9
Cpe11g01144 CST 1 122 Cytoskeleton Gene Families AT4G29350 71.3 7.4e-47 183.7
Cpe11g01145 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 8.9e-64 240.0
Cpe11g01155 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 8.9e-64 240.0
Cpe07g01035 CST 1 131 Cytoskeleton Gene Families AT4G29340 84.8 7.5e-63 236.9
Cpe12g00643 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 3.9e-59 224.6
Cpe17g00524 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.1 1.1e-58 223.0
Cpe02g01699 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 70.9 2.4e-53 205.3
Cpe03g01090 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 70.1 2.4e-53 205.3
Cpe11g01144 CST 1 122 Cytoskeleton Gene Families AT4G29340 65.6 4.9e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g01155 Cpe_Chr11 FPKM 0.0 0.0 0.0 0.0 5.698594 4.928239 5.255356 0.0 0.0 0.0