Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01158 ATGAAGATCGTGGAATTGGAAGATGCTGGGAATGATCGGGAAAATGGAATGGGTAGCGATCAGATTGTGAAGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCCTGTTTTACCCTACCCTTCTGTATAACGTTCTTCGGAATAAAATGGAGGCTGAATTCAGATGGTGGGATGAAATCGATCAGATTTGTCTCTGCATTATACTGATCAAGGATTTTCCATTGAGTTTTTCTGTCATTAATGTCAAGAACTTTGTCTTGCCTTCCCAGTTTCTTTTGCTCGGTGCAGTGCCGTTCCCCAAAGACGTGCCGAGGTTGAAGGAGCTCGGTGTCGGTGGTGTTATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCGTTGTATTATCGCTATGGAATCGATCATTTAAAGATCCCGACGAGAGATTATTGTTTTGCTCCGAAATTTTCTGATATTAGTCGAGCTGTGGACTTCATTCACAGAAACGCGTTGTGTGGTAAAACAACGTACGTCCATTGTAAAGCGGGGCGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCGCTGGAATACGTGCGCTCGAGAAGACCACGGGTGTTGCTCGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTCGACCCGTTGCAAGTTCTAGCCCTCCCTCAGGAGGAGATGCAGTCCTGATTACGAAAGACGATCTAGAAGGATATCACGGTACGTGCATCGACAGTGCAGGTAGAGAACTTGCAGTTGGCCCTTGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCGTCGTTGTTAGTTCATGGCAGCAGTGGATCTCTCATGAAGCGTCTGCCGGTGTCGGAGGCTCGAGCTTGTTGA 939 47.6 MKIVELEDAGNDRENGMGSDQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEIDQICLCIILIKDFPLSFSVINVKNFVLPSQFLLLGAVPFPKDVPRLKELGVGGVITLNEPYETLVPSSLYYRYGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNALCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVASSSPPSGGDAVLITKDDLEGYHGTCIDSAGRELAVGPWMGKSKPMIARLSCLFSSLLVHGSSGSLMKRLPVSEARAC 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9541388 9543690 + Cp4.1LG11g11570.1 Cpe11g01158 477952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01158 312 CDD PTPMT1 93 231 IPR044596 GO:0004721
Cpe11g01158 312 Gene3D Protein tyrosine phosphatase superfamily 92 233 IPR029021 -
Cpe11g01158 312 Pfam Dual specificity phosphatase, catalytic domain 131 230 IPR000340 GO:0008138|GO:0016311
Cpe11g01158 312 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 229 IPR029021 -
Cpe11g01158 312 SMART dsp_5 90 231 IPR020422 GO:0006470|GO:0008138
Cpe11g01158 312 PANTHER OS01G0739200 PROTEIN 93 312 - -
Cpe11g01158 312 ProSiteProfiles Dual specificity protein phosphatase domain profile. 84 234 IPR020422 GO:0006470|GO:0008138
Cpe11g01158 312 PANTHER OS01G0739200 PROTEIN 1 68 - -
Cpe11g01158 312 PANTHER - 93 312 - -
Cpe11g01158 312 PANTHER - 1 68 - -
Cpe11g01158 312 ProSitePatterns Tyrosine specific protein phosphatases active site. 176 186 IPR016130 GO:0016311|GO:0016791
Cpe11g01158 312 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 155 223 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01148 Cpe-Chr11:9491701 Cpe11g01158 Cpe-Chr11:9541388 0 dispersed
Cpe11g01158 Cpe-Chr11:9541388 Cpe14g00928 Cpe-Chr14:7805755 5.51E-93 dispersed
Cpe11g01158 Cpe-Chr11:9541388 Cpe07g01040 Cpe-Chr7:9344160 1.32E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01158 - - csv:101220751 511.916