Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01178 ATGGTGGCAATGACATCAGTGGCGGTTGCCATTAACGGAGTTCGCGGCGGCAAAGGCGGTGGCGGAAGCCGCCGCGCCGTCAGATGGGCTGTGGAGAATCTGTTGCCGACCGCCGATCGGTTCATATTGGTTCATGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTGGCGGTCTCGGAGCTTGACGCTGATGTAGTAGCGCTTTATGTTCATGATGTGAAACAGAAGTATGAACAAATTTTTGTTCCTTTCAAGAAGATGTGTAGAAGAGAGAAGTTTCTTCTACTGGTTGAAACTTTGATTCTGGAGGATGATAATCCTGCCACTGCACTTGTGAGATATGCATCTGAATCTGGGATTAAACACTTGGTTTTGGGTTCTTGTTTTAGGACTTGCATAGCGAGGAGGCTGAAAGGGGATTCAGTACCCTCTGCTATTATGAGAGCTGCTTCTAGGTGTTTTGATATCTATGTTATATATAGGAGAAGAGTCATCACACGAACGGCTACTACTGCTCCATCTAGTGAAACCGACTCGAGGCAGTGGATGCTCGGTGATACCGATTACTATAGGGGTTCGAGTACAGTTAGCGAAAGATCATTTGGAACGCTGTCTTCTTCTTCCATGTCGAATGTTCATCGAAGGGGCGATAGCCTCGAAGTTAATTCTACCGAGCAATTGAACTCTTTGAGTACTCTAACTGAGGAGGAAGATATGCAGGCTGAAGTTGAATCGCTGCAGCTAGAATTGGAGAGTACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTTGTTCAGTCACTTACATCCGAATGCCTTGAAGAATCAAGAAAAGTGAACGCTGCTTTGGAAAGGGAACAAGCTTTGAGGAAAGTGGCTGCTGAAGAGAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAGGACTCGCTAGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAGTCCTTGGAGAAGAAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGGTATACTACAGCCGAAATAGAAGCTGCAACGAATTTCTTCGATGAAGTTAACGTGATTGGTGAGGGCGGATATGGGAAAGTCTACGTATGCAGTCTCGATCATACCCCGGTAGCCATTAAGGTCTTTCGACACGACATATTCGAGAACAAGGACGAGTTTCTGAAAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACACGTGGTTTTACTGCTCGGAGCTTGCCCCGAGCGAGGTTGCTTAATTTACGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAATGGAAAACCTCCCCTCCCGTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCGTCTGGGCTTGCCTTCTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCGGGTAATATCTTACTTGATAGAAACTTTGTAAGCAAAATCTCGGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCTGACAATGTGACGGAGTATCGAAACACCATTCTTGCTGGGACTCTGCATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAAGTCGGATACGTATGCGCTCGGAGTAACAATTCTGCAGTTGTTGACCGGGCGGCAGCCACACGGTCTTCTTCTGGCTGTCGAGAACTCCATCGCAAGCACCTCGCTTGCAGATATTCTAGATAAGTCGATTACTGACTGGCCTGTAGCTGAAGCTGAGGAGCTAGCTGGACTGGCACTAAAGTGCTTGAAGCTTAGATGCAGGGATAGGCCAGATCTTGAAACGGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCTGATACGTTTCAGAAAGGTGCTGCCAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAGTAATGGAGGATCCTTATATAGCCGCCGACGGATTTACTTACGAGTTCGAAGCCATTAAAGCGTGGCTCGAGAAATACGACGTATCGCCCGTGACGAAGCTTAAGCTCCAGCATTCTATGTTTATTCCTAACTATACTCTGCGTTCTGCCATACAAGAGTGGAGGTCAAGACTGACATTTTCTTCTTCCTAA 2172 46.04 MVAMTSVAVAINGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKMCRREKFLLLVETLILEDDNPATALVRYASESGIKHLVLGSCFRTCIARRLKGDSVPSAIMRAASRCFDIYVIYRRRVITRTATTAPSSETDSRQWMLGDTDYYRGSSTVSERSFGTLSSSSMSNVHRRGDSLEVNSTEQLNSLSTLTEEEDMQAEVESLQLELESTVSLYKQACEELVQSLTSECLEESRKVNAALEREQALRKVAAEEKAKHLEAIKELEEAKDSLAKEAYERQLAELNALKESLEKKKIVDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGEGGYGKVYVCSLDHTPVAIKVFRHDIFENKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKPPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVENSIASTSLADILDKSITDWPVAEAEELAGLALKCLKLRCRDRPDLETEVLPVLKRLVDFADTFQKGAANPPSHYFCPILQEVMEDPYIAADGFTYEFEAIKAWLEKYDVSPVTKLKLQHSMFIPNYTLRSAIQEWRSRLTFSSS 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9672096 9677099 + Cp4.1LG11g11720.1 Cpe11g01178 477972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01178 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 145 - -
Cpe11g01178 723 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 217 717 - -
Cpe11g01178 723 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 5 205 - -
Cpe11g01178 723 CDD STK_N 6 164 - -
Cpe11g01178 723 ProSiteProfiles Protein kinase domain profile. 369 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01178 723 Coils Coil 295 344 - -
Cpe11g01178 723 Gene3D HUPs 4 158 IPR014729 -
Cpe11g01178 723 Gene3D Transferase(Phosphotransferase) domain 1 442 646 - -
Cpe11g01178 723 SUPERFAMILY RING/U-box 646 717 - -
Cpe11g01178 723 Pfam Protein kinase domain 370 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01178 723 SUPERFAMILY Protein kinase-like (PK-like) 352 625 IPR011009 -
Cpe11g01178 723 ProSiteProfiles U-box domain profile. 648 721 IPR003613 GO:0004842|GO:0016567
Cpe11g01178 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 720 IPR013083 -
Cpe11g01178 723 SMART Ubox_2 652 714 IPR003613 GO:0004842|GO:0016567
Cpe11g01178 723 Pfam U-box domain 650 715 IPR003613 GO:0004842|GO:0016567
Cpe11g01178 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Cpe11g01178 723 Pfam Universal stress protein family 22 155 IPR006016 -
Cpe11g01178 723 Gene3D Phosphorylase Kinase; domain 1 348 441 - -
Cpe11g01178 723 PANTHER OS02G0152300 PROTEIN 217 717 - -
Cpe11g01178 723 PANTHER OS02G0152300 PROTEIN 5 205 - -
Cpe11g01178 723 SMART serkin_6 369 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g01178 723 ProSitePatterns Protein kinases ATP-binding region signature. 375 396 IPR017441 GO:0005524
Cpe11g01178 723 CDD RING-Ubox_WDSUB1_like 653 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00741 Cpe-Chr5:4536729 Cpe11g01178 Cpe-Chr11:9672096 7.41E-128 dispersed
Cpe11g01178 Cpe-Chr11:9672096 Cpe12g00605 Cpe-Chr12:6036061 3.58E-146 dispersed
Cpe12g00371 Cpe-Chr12:2638981 Cpe11g01178 Cpe-Chr11:9672096 3.69E-82 dispersed
Cpe11g01178 Cpe-Chr11:9672096 Cpe17g00472 Cpe-Chr17:3514912 4.72E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62732 PF00069 Pkinase 4.00E-40 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01178 - - cpep:111805862 1363.98