Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01184 CTCTCTTGCGGTCGCCTCTGCATCATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCGTTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTTCGTCGCTATAATAATGCCAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTAATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATGCCATACCAAGACAGCAGTTTTCTTTTATACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTTTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATAATTAACTCAGGCCTCTCGCCAGTTTTGGCTGTGAAGTCTGGGAAAGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACCGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATCGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAAAGAATTGGTGGAATGTCATCCTCCTCAGCTCAGGTACGCTTGACCGGATCGAAATTGGAAACGCCGATAATCGCACCCAAGATAGCAGCGACGACTACTCCACCGGCGGCAATGCTGAGCAAGAAATTCTTTAGAGAGGGACTAACTCCAGGCCCAGCAGCTTCAGCCACCTCAGGAAGCACCATGGAGGCCGTCAGTGCAGTAGCAGCGAGTCCAGCAACTGCCTTCTCCTTCAAAGAAGCCCGCACTTGGAACTTGGCTCTGGAGTTTGATGAAGCGGTTGGCTTGTTGGAAGGCCTCAAAGGCAATGCCTTAGCGAAGGCGTCGGTGCTCCTTGCTCTCTTCTGGGTCGCATTAGTAATTGGCATAGCCATTGAAACTGCGGAAGTTGAAGCCATTGGGTTCGGTCTTGCCTCTTCTCAAGGTCGACCAAAAATGGGCAGTTGTAGTTTTGGCACTCCGGTTTTGGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACCGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATCGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAAAGGTAA 2817 43.49 LSCGRLCIMPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENFAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDAIPRQQFSFIPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKRIGGMSSSSAQVRLTGSKLETPIIAPKIAATTTPPAAMLSKKFFREGLTPGPAASATSGSTMEAVSAVAASPATAFSFKEARTWNLALEFDEAVGLLEGLKGNALAKASVLLALFWVALVIGIAIETAEVEAIGFGLASSQGRPKMGSCSFGTPVLATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKR 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9703803 9709789 + Cp4.1LG11g11730.1 Cpe11g01184 477978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01184 938 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 12 628 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01184 938 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 783 935 - -
Cpe11g01184 938 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 10 626 - -
Cpe11g01184 938 CDD RPA1_DBD_A 188 291 - -
Cpe11g01184 938 CDD RPA1_DBD_C 782 937 IPR013955 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 452 628 IPR012340 -
Cpe11g01184 938 PANTHER REPLICATION FACTOR A 1, RFA1 10 626 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01184 938 Gene3D - 298 437 IPR012340 -
Cpe11g01184 938 CDD RPA1_DBD_B 320 427 - -
Cpe11g01184 938 Gene3D - 438 628 IPR012340 -
Cpe11g01184 938 Gene3D - 774 937 IPR012340 -
Cpe11g01184 938 PANTHER REPLICATION FACTOR A 1, RFA1 783 935 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01184 938 Gene3D - 185 295 IPR012340 -
Cpe11g01184 938 Pfam Replication factor-A protein 1, N-terminal domain 13 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe11g01184 938 Pfam Replication factor-A C terminal domain 471 622 IPR013955 -
Cpe11g01184 938 Pfam Replication factor-A C terminal domain 783 931 IPR013955 -
Cpe11g01184 938 Pfam Replication protein A OB domain 309 413 IPR031657 -
Cpe11g01184 938 CDD RPA1_DBD_C 455 628 IPR013955 -
Cpe11g01184 938 CDD RPA1N 17 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 303 433 IPR012340 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 186 299 IPR012340 -
Cpe11g01184 938 Pfam OB-fold nucleic acid binding domain 200 271 IPR004365 GO:0003676
Cpe11g01184 938 Gene3D - 11 119 IPR012340 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 9 114 IPR012340 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 782 937 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01184 K07466 RFA1, RPA1, rpa; replication factor A1 - csv:101207583 1157.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00899 Cpe-Chr8:7098340 Cpe11g01184 Cpe-Chr11:9703803 2.99E-69 dispersed
Cpe11g01184 Cpe-Chr11:9703803 Cpe14g01003 Cpe-Chr14:8460607 1.28E-68 dispersed
Cpe11g01184 Cpe-Chr11:9703803 Cpe11g01188 Cpe-Chr11:9720977 9.46E-103 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g01023 . 106 786 Core DNA Replication Machinery Family AT4G14700 65.0 4.4e-259 891.3
Cpe06g01023 . 73 786 Core DNA Replication Machinery Family AT4G12620 65.7 1.7e-271 932.6
Cpe07g00469 . 1 276 Core DNA Replication Machinery Family AT2G37560 68.1 2.7e-109 392.5
Cpe01g01014 . 9 410 Core DNA Replication Machinery Family AT2G01120 65.8 3.4e-154 542.0
Cpe12g00375 . 3 536 Core DNA Replication Machinery Family AT4G29910 56.9 1.6e-167 586.6
Cpe11g00701 . 1 226 Core DNA Replication Machinery Family AT1G26840 73.0 1.5e-89 326.6
Cpe08g00047 . 962 1793 Core DNA Replication Machinery Family AT1G79150 58.4 2.9e-242 835.5
Cpe15g00894 . 1 368 Core DNA Replication Machinery Family AT1G79150 52.6 2.1e-102 370.9
Cpe03g00916 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1335.9
Cpe08g00006 . 1 966 Core DNA Replication Machinery Family AT1G44900 73.4 0.0e+00 1331.6
Cpe19g01129 CCT 65 636 Core DNA Replication Machinery Family AT5G46280 81.5 2.1e-268 921.8
Cpe04g00111 CST 1 845 Core DNA Replication Machinery Family AT2G16440 74.9 0.0e+00 1179.5
Cpe15g00556 CST 1 845 Core DNA Replication Machinery Family AT2G16440 76.9 0.0e+00 1159.4
Cpe07g01135 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1114.0
Cpe19g01218 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1170.6
Cpe17g00747 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1218.0
Cpe12g00890 . 8 678 Core DNA Replication Machinery Family AT4G02060 81.3 0.0e+00 1137.9
Cpe16g00653 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.4 1.4e-162 570.1
Cpe16g00653 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.1 2.0e-142 503.1
Cpe12g01089 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.6 5.2e-257 884.0
Cpe08g01122 . 37 715 Core DNA Replication Machinery Family AT3G09660 67.0 2.4e-278 955.3
Cpe15g00364 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.3e-287 984.9
Cpe16g00316 . 1 437 Core DNA Replication Machinery Family AT2G20980 51.3 2.6e-111 399.4
Cpe06g00607 CCT 7 893 Core DNA Replication Machinery Family AT1G77320 50.1 5.9e-237 818.1
Cpe17g00581 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 7.5e-75 277.3
Cpe19g00178 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT1G19080 64.1 1.7e-57 219.5
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT3G55490 64.1 1.7e-57 219.5
Cpe03g01740 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Cpe05g01165 . 1 1529 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1731.1
Cpe09g00571 . 2 625 Core DNA Replication Machinery Family AT1G67630 63.5 1.3e-223 773.1
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe06g00974 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.2 1.7e-172 602.8
Cpe19g00507 . 47 1084 Core DNA Replication Machinery Family AT5G63960 80.4 0.0e+00 1696.4
Cpe03g00370 . 15 431 Core DNA Replication Machinery Family AT2G42120 73.1 3.6e-191 664.8
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe05g00419 . 1 2115 Core DNA Replication Machinery Family AT1G08260 70.1 0.0e+00 2947.9
Cpe05g00419 . 9 2221 Core DNA Replication Machinery Family AT2G27120 67.0 0.0e+00 2918.3
Cpe02g01094 . 7 502 Core DNA Replication Machinery Family AT5G22110 69.0 2.1e-195 679.1
Cpe05g00456 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.6 3.9e-304 1041.2
Cpe14g00835 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 3.8e-172 601.3
Cpe10g01069 . 11 275 Core DNA Replication Machinery Family AT5G27740 65.4 7.0e-92 334.7
Cpe02g00567 . 3 323 Core DNA Replication Machinery Family AT1G21690 80.7 3.3e-144 508.4
Cpe01g02062 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.9 2.6e-150 528.9
Cpe13g00630 . 1 455 Core DNA Replication Machinery Family AT1G77470 62.9 2.3e-146 515.8
Cpe11g01184 . 34 626 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe11g01188 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe08g00899 . 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Cpe14g01003 . 34 685 Core DNA Replication Machinery Family AT2G06510 52.6 1.0e-199 693.7
Cpe04g01458 . 1 622 Core DNA Replication Machinery Family AT5G08020 67.9 3.5e-245 844.7
Cpe08g00899 . 6 804 Core DNA Replication Machinery Family AT5G45400 51.7 7.0e-231 797.7
Cpe14g01003 . 10 784 Core DNA Replication Machinery Family AT5G45400 51.6 4.8e-224 775.0
Cpe04g01458 . 1 617 Core DNA Replication Machinery Family AT5G61000 65.6 6.7e-239 823.9
Cpe08g00899 . 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 4.9e-231 798.1
Cpe14g01003 . 5 771 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.3
Cpe02g00418 . 1 252 Core DNA Replication Machinery Family AT2G24490 50.2 4.2e-68 255.4
Cpe04g00203 . 1 402 Core DNA Replication Machinery Family AT5G26680 80.7 5.5e-181 630.9
Cpe03g01241 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-114 410.2
Cpe16g00505 . 44 785 Core DNA Replication Machinery Family AT1G08130 66.3 5.4e-278 954.1
Cpe16g00505 . 204 785 Core DNA Replication Machinery Family AT1G49250 66.6 3.6e-227 785.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010255 1 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g01184 Cpe_Chr11 FPKM 61.251472 67.459969 17.445644 18.382797 37.158939 33.464317 37.227669 3.648352 4.413351 3.493157