Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01184 CTCTCTTGCGGTCGCCTCTGCATCATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCGTTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTTCGTCGCTATAATAATGCCAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTAATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATGCCATACCAAGACAGCAGTTTTCTTTTATACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTTTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATAATTAACTCAGGCCTCTCGCCAGTTTTGGCTGTGAAGTCTGGGAAAGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACCGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATCGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAAAGAATTGGTGGAATGTCATCCTCCTCAGCTCAGGTACGCTTGACCGGATCGAAATTGGAAACGCCGATAATCGCACCCAAGATAGCAGCGACGACTACTCCACCGGCGGCAATGCTGAGCAAGAAATTCTTTAGAGAGGGACTAACTCCAGGCCCAGCAGCTTCAGCCACCTCAGGAAGCACCATGGAGGCCGTCAGTGCAGTAGCAGCGAGTCCAGCAACTGCCTTCTCCTTCAAAGAAGCCCGCACTTGGAACTTGGCTCTGGAGTTTGATGAAGCGGTTGGCTTGTTGGAAGGCCTCAAAGGCAATGCCTTAGCGAAGGCGTCGGTGCTCCTTGCTCTCTTCTGGGTCGCATTAGTAATTGGCATAGCCATTGAAACTGCGGAAGTTGAAGCCATTGGGTTCGGTCTTGCCTCTTCTCAAGGTCGACCAAAAATGGGCAGTTGTAGTTTTGGCACTCCGGTTTTGGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACCGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATCGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAAAGGTAA 2817 43.49 LSCGRLCIMPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENFAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDAIPRQQFSFIPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKRIGGMSSSSAQVRLTGSKLETPIIAPKIAATTTPPAAMLSKKFFREGLTPGPAASATSGSTMEAVSAVAASPATAFSFKEARTWNLALEFDEAVGLLEGLKGNALAKASVLLALFWVALVIGIAIETAEVEAIGFGLASSQGRPKMGSCSFGTPVLATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKR 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9703803 9709789 + Cp4.1LG11g11730.1 Cpe11g01184 477978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01184 938 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 12 628 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01184 938 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 783 935 - -
Cpe11g01184 938 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 10 626 - -
Cpe11g01184 938 CDD RPA1_DBD_A 188 291 - -
Cpe11g01184 938 CDD RPA1_DBD_C 782 937 IPR013955 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 452 628 IPR012340 -
Cpe11g01184 938 PANTHER REPLICATION FACTOR A 1, RFA1 10 626 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01184 938 Gene3D - 298 437 IPR012340 -
Cpe11g01184 938 CDD RPA1_DBD_B 320 427 - -
Cpe11g01184 938 Gene3D - 438 628 IPR012340 -
Cpe11g01184 938 Gene3D - 774 937 IPR012340 -
Cpe11g01184 938 PANTHER REPLICATION FACTOR A 1, RFA1 783 935 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01184 938 Gene3D - 185 295 IPR012340 -
Cpe11g01184 938 Pfam Replication factor-A protein 1, N-terminal domain 13 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe11g01184 938 Pfam Replication factor-A C terminal domain 471 622 IPR013955 -
Cpe11g01184 938 Pfam Replication factor-A C terminal domain 783 931 IPR013955 -
Cpe11g01184 938 Pfam Replication protein A OB domain 309 413 IPR031657 -
Cpe11g01184 938 CDD RPA1_DBD_C 455 628 IPR013955 -
Cpe11g01184 938 CDD RPA1N 17 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 303 433 IPR012340 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 186 299 IPR012340 -
Cpe11g01184 938 Pfam OB-fold nucleic acid binding domain 200 271 IPR004365 GO:0003676
Cpe11g01184 938 Gene3D - 11 119 IPR012340 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 9 114 IPR012340 -
Cpe11g01184 938 SUPERFAMILY Nucleic acid-binding proteins 782 937 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00899 Cpe-Chr8:7098340 Cpe11g01184 Cpe-Chr11:9703803 2.99E-69 dispersed
Cpe11g01184 Cpe-Chr11:9703803 Cpe14g01003 Cpe-Chr14:8460607 1.28E-68 dispersed
Cpe11g01184 Cpe-Chr11:9703803 Cpe11g01188 Cpe-Chr11:9720977 9.46E-103 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01184 K07466 - csv:101207583 1157.51