Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01188 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCGTTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTTCGTCGCTATAATAATGCCAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTAATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATGCCATACCAAGACAGCAGTTTTCTTTTATACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTTTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATAATTAACTCAGGCCTCTCGCCAGTTTTGGCTGTGAAGTCTGGGAAAGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCGTTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACCGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATCGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAAAGGTAA 1866 41.69 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENFAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDAIPRQQFSFIPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9720977 9724606 + Cp4.1LG11g11880.1 Cpe11g01188 477982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01188 621 Pfam OB-fold nucleic acid binding domain 192 263 IPR004365 GO:0003676
Cpe11g01188 621 CDD RPA1_DBD_A 180 283 - -
Cpe11g01188 621 Pfam Replication protein A OB domain 301 405 IPR031657 -
Cpe11g01188 621 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Cpe11g01188 621 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Cpe11g01188 621 Gene3D - 177 287 IPR012340 -
Cpe11g01188 621 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01188 621 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe11g01188 621 CDD RPA1_DBD_B 312 419 - -
Cpe11g01188 621 SUPERFAMILY Nucleic acid-binding proteins 178 291 IPR012340 -
Cpe11g01188 621 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Cpe11g01188 621 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe11g01188 621 CDD RPA1_DBD_C 447 620 IPR013955 -
Cpe11g01188 621 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe11g01188 621 Gene3D - 430 620 IPR012340 -
Cpe11g01188 621 Gene3D - 3 111 IPR012340 -
Cpe11g01188 621 SUPERFAMILY Nucleic acid-binding proteins 444 620 IPR012340 -
Cpe11g01188 621 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cpe11g01188 621 Gene3D - 290 429 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01458 Cpe-Chr4:11631581 Cpe11g01188 Cpe-Chr11:9720977 1.15E-97 dispersed
Cpe11g01188 Cpe-Chr11:9720977 Cpe14g01003 Cpe-Chr14:8460607 0 dispersed
Cpe11g01184 Cpe-Chr11:9703803 Cpe11g01188 Cpe-Chr11:9720977 9.46E-103 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01188 K07466 - csv:101207583 1157.51