Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01191 ATGGATGGGGGAGTAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCTGGAATGATTAGAGCTCTCACCACCGATGTCGTGGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGACTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCGGAAGAAGTACCTCCAGAGGTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAAAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTTCTAGATTTGGCTGTGATAAATCTGACAGGAAACGCCTCTTTACGATGATAAATGATCTGCCCACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTGGTTTCAAATAACAGCAGCAGCAAATCCAGGACTGGCCCAAAGGGGAGAGATTCTGAATCAAGCAAGTTGTCTAATGGGTTGGCAAAAGATGAAGACGAGGGACTGAATGAGGAAGCTGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTTTGGATATGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGGGCACGGCCCTGA 756 47.49 MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVEFYQLCDPEKENLCLYGLPNEQWEVNLPAEEVPPEVPEPALGINFARDGMQKKDWLSLVAVHSDAWLLAVAFYFGSRFGCDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLSNGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9739053 9742517 + Cp4.1LG11g11910.1 Cpe11g01191 477985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01191 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Cpe11g01191 251 Pfam PHD-finger 198 247 IPR019787 -
Cpe11g01191 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cpe11g01191 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cpe11g01191 251 MobiDBLite consensus disorder prediction 162 182 - -
Cpe11g01191 251 MobiDBLite consensus disorder prediction 145 189 - -
Cpe11g01191 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cpe11g01191 251 PANTHER CPG BINDING PROTEIN 3 251 IPR045104 GO:0006355|GO:0042393
Cpe11g01191 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 251 - -
Cpe11g01191 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cpe11g01191 251 SMART PHD_3 197 245 IPR001965 -
Cpe11g01191 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cpe11g01191 251 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00358 Cpe-Chr11:1957860 Cpe11g01191 Cpe-Chr11:9739053 2.16E-139 dispersed
Cpe11g01191 Cpe-Chr11:9739053 Cpe17g00469 Cpe-Chr17:3498302 8.87E-126 dispersed
Cpe11g01191 Cpe-Chr11:9739053 Cpe07g01069 Cpe-Chr7:9501216 1.15E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50282 PF12165 Alfin 2.10E-67 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01191 - - rcu:8272513 433.721