Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01191 ATGGATGGGGGAGTAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCTGGAATGATTAGAGCTCTCACCACCGATGTCGTGGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGACTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCGGAAGAAGTACCTCCAGAGGTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAAAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTTCTAGATTTGGCTGTGATAAATCTGACAGGAAACGCCTCTTTACGATGATAAATGATCTGCCCACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTGGTTTCAAATAACAGCAGCAGCAAATCCAGGACTGGCCCAAAGGGGAGAGATTCTGAATCAAGCAAGTTGTCTAATGGGTTGGCAAAAGATGAAGACGAGGGACTGAATGAGGAAGCTGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTTTGGATATGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGGGCACGGCCCTGA 756 47.49 MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVEFYQLCDPEKENLCLYGLPNEQWEVNLPAEEVPPEVPEPALGINFARDGMQKKDWLSLVAVHSDAWLLAVAFYFGSRFGCDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLSNGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9739053 9742517 + Cp4.1LG11g11910.1 Cpe11g01191 477985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01191 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Cpe11g01191 251 Pfam PHD-finger 198 247 IPR019787 -
Cpe11g01191 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cpe11g01191 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cpe11g01191 251 MobiDBLite consensus disorder prediction 162 182 - -
Cpe11g01191 251 MobiDBLite consensus disorder prediction 145 189 - -
Cpe11g01191 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cpe11g01191 251 PANTHER CPG BINDING PROTEIN 3 251 IPR045104 GO:0006355|GO:0042393
Cpe11g01191 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 251 - -
Cpe11g01191 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cpe11g01191 251 SMART PHD_3 197 245 IPR001965 -
Cpe11g01191 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cpe11g01191 251 MobiDBLite consensus disorder prediction 145 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01191 - - - rcu:8272513 433.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00358 Cpe-Chr11:1957860 Cpe11g01191 Cpe-Chr11:9739053 2.16E-139 dispersed
Cpe11g01191 Cpe-Chr11:9739053 Cpe17g00469 Cpe-Chr17:3498302 8.87E-126 dispersed
Cpe11g01191 Cpe-Chr11:9739053 Cpe07g01069 Cpe-Chr7:9501216 1.15E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g01069 . 52 292 Alfin-like Transcription Factor Family AT1G14510 69.4 3.7e-95 345.1
Cpe07g00574 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.8 3.1e-94 342.0
Cpe17g00469 CST 10 245 Alfin-like Transcription Factor Family AT1G14510 68.8 2.6e-93 339.0
Cpe11g00358 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 5.9e-93 337.8
Cpe11g01191 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.3 1.3e-92 336.7
Cpe12g00597 CST 10 251 Alfin-like Transcription Factor Family AT1G14510 66.3 9.4e-91 330.5
Cpe01g00797 CST 4 212 Alfin-like Transcription Factor Family AT1G14510 84.2 1.6e-90 329.7
Cpe14g00651 CST 1 218 Alfin-like Transcription Factor Family AT1G14510 80.3 1.4e-83 306.6
Cpe01g00130 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 4.5e-77 285.0
Cpe03g00051 CCT,ECH 8 247 Alfin-like Transcription Factor Family AT1G14510 58.0 8.5e-76 280.8
Cpe08g01225 CCT,ECH 8 236 Alfin-like Transcription Factor Family AT1G14510 57.0 9.7e-72 267.3
Cpe01g01035 CCT,ECH 9 215 Alfin-like Transcription Factor Family AT1G14510 51.7 7.7e-61 231.1
Cpe07g01069 . 44 294 Alfin-like Transcription Factor Family AT5G26210 75.6 1.1e-110 396.7
Cpe11g00358 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.2e-108 389.0
Cpe07g00574 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 8.5e-108 387.1
Cpe11g01191 . 1 250 Alfin-like Transcription Factor Family AT5G26210 73.6 1.9e-107 386.0
Cpe17g00469 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 1.0e-97 353.6
Cpe12g00597 CST 1 251 Alfin-like Transcription Factor Family AT5G26210 64.3 1.4e-94 343.2
Cpe01g00130 CCT,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 4.4e-80 295.0
Cpe03g00051 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G26210 56.6 7.0e-78 287.7
Cpe01g00797 CST 4 214 Alfin-like Transcription Factor Family AT5G26210 74.1 1.7e-76 283.1
Cpe08g01225 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT5G26210 54.9 7.5e-72 267.7
Cpe14g00651 CST 9 218 Alfin-like Transcription Factor Family AT5G26210 67.3 4.9e-63 238.4
Cpe01g01035 CCT,ECH 9 217 Alfin-like Transcription Factor Family AT5G26210 50.2 2.1e-61 233.0
Cpe07g01069 . 44 294 Alfin-like Transcription Factor Family AT3G42790 72.2 1.8e-102 369.4
Cpe11g00358 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.4e-99 359.0
Cpe11g01191 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.3 2.4e-99 359.0
Cpe07g00574 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 71.6 9.3e-99 357.1
Cpe17g00469 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 4.3e-96 348.2
Cpe12g00597 CST 1 251 Alfin-like Transcription Factor Family AT3G42790 62.3 2.9e-92 335.5
Cpe01g00130 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.5e-80 296.6
Cpe03g00051 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT3G42790 56.4 1.0e-76 283.9
Cpe08g01225 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT3G42790 55.8 3.0e-73 272.3
Cpe01g00797 CST 4 214 Alfin-like Transcription Factor Family AT3G42790 70.6 5.7e-72 268.1
Cpe01g01035 CCT,ECH 9 217 Alfin-like Transcription Factor Family AT3G42790 52.1 7.4e-64 241.1
Cpe14g00651 CST 3 156 Alfin-like Transcription Factor Family AT3G42790 70.1 5.5e-59 224.9
Cpe01g00130 CCT,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.6e-110 394.0
Cpe03g00051 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G05610 72.9 5.8e-106 380.9
Cpe08g01225 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G05610 70.5 9.9e-98 353.6
Cpe01g01035 CCT,ECH 1 218 Alfin-like Transcription Factor Family AT5G05610 69.8 3.5e-95 345.1
Cpe17g00469 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 65.7 5.2e-91 331.3
Cpe07g01069 . 51 294 Alfin-like Transcription Factor Family AT5G05610 64.5 2.6e-90 328.9
Cpe11g01191 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.8e-90 327.8
Cpe07g00574 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.9 2.9e-89 325.5
Cpe11g00358 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 7.1e-88 320.9
Cpe12g00597 CST 10 248 Alfin-like Transcription Factor Family AT5G05610 63.8 1.7e-86 316.2
Cpe01g00797 CST 4 214 Alfin-like Transcription Factor Family AT5G05610 62.1 2.1e-68 256.1
Cpe14g00651 CST 9 173 Alfin-like Transcription Factor Family AT5G05610 64.1 4.2e-56 215.3
Cpe01g00130 CCT,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 9.3e-93 337.0
Cpe03g00051 CCT,ECH 53 250 Alfin-like Transcription Factor Family AT3G11200 77.2 1.8e-88 322.8
Cpe01g01035 CCT,ECH 41 218 Alfin-like Transcription Factor Family AT3G11200 77.3 6.2e-81 297.7
Cpe08g01225 CCT,ECH 43 239 Alfin-like Transcription Factor Family AT3G11200 71.8 1.7e-78 289.7
Cpe07g01069 . 87 294 Alfin-like Transcription Factor Family AT3G11200 63.4 4.3e-74 275.0
Cpe11g01191 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 7.4e-74 274.2
Cpe17g00469 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 9.6e-74 273.9
Cpe07g00574 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 63.6 1.8e-72 269.6
Cpe11g00358 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.0e-71 266.2
Cpe12g00597 CST 44 248 Alfin-like Transcription Factor Family AT3G11200 63.5 5.8e-71 264.6
Cpe01g00797 CST 1 214 Alfin-like Transcription Factor Family AT3G11200 62.6 3.8e-70 261.9
Cpe14g00651 CST 51 218 Alfin-like Transcription Factor Family AT3G11200 59.8 2.1e-44 176.4
Cpe14g00651 CST 1 169 Alfin-like Transcription Factor Family AT2G02470 81.1 1.1e-73 273.9
Cpe07g01069 . 44 201 Alfin-like Transcription Factor Family AT2G02470 75.9 1.8e-65 246.5
Cpe11g01191 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 3.1e-65 245.7
Cpe07g00574 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 5.2e-65 245.0
Cpe11g00358 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.0e-64 243.0
Cpe12g00597 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 1.4e-62 236.9
Cpe17g00469 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 1.9e-62 236.5
Cpe01g00797 CST 4 124 Alfin-like Transcription Factor Family AT2G02470 86.0 2.6e-56 216.1
Cpe08g01225 CCT,ECH 8 167 Alfin-like Transcription Factor Family AT2G02470 63.6 4.6e-53 205.3
Cpe01g00130 CCT,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 7.8e-53 204.5
Cpe03g00051 CCT,ECH 8 177 Alfin-like Transcription Factor Family AT2G02470 60.5 2.5e-51 199.5
Cpe01g01035 CCT,ECH 9 132 Alfin-like Transcription Factor Family AT2G02470 56.0 4.6e-37 152.1
Cpe07g01069 . 44 207 Alfin-like Transcription Factor Family AT5G20510 77.0 3.3e-72 268.5
Cpe07g00574 CCT,ECH 1 159 Alfin-like Transcription Factor Family AT5G20510 78.1 2.1e-71 265.8
Cpe11g00358 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 6.2e-71 264.2
Cpe17g00469 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 3.4e-69 258.5
Cpe12g00597 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.9e-68 255.4
Cpe11g01191 . 1 164 Alfin-like Transcription Factor Family AT5G20510 72.1 4.2e-67 251.5
Cpe14g00651 CST 9 176 Alfin-like Transcription Factor Family AT5G20510 69.4 3.1e-62 235.3
Cpe01g00130 CCT,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.4e-53 205.3
Cpe08g01225 CCT,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 5.5e-51 198.0
Cpe03g00051 CCT,ECH 4 155 Alfin-like Transcription Factor Family AT5G20510 60.9 2.3e-49 192.6
Cpe01g00797 CST 4 132 Alfin-like Transcription Factor Family AT5G20510 68.7 5.3e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50282 PF12165 Alfin 2.10E-67 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g01191 Cpe_Chr11 FPKM 14.68142 16.10099 9.915452 10.433714 12.818411 13.634609 11.96173 8.199538 7.238592 7.105521