Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01195 ATGGTTCCACAGCGCCACCACAACAGCAACGATGGCGTTTCTCAACGGGTCAACAGCCCACGGTTCTCGGGTCCTATAACTCGTCGTGCACACTCCTTCAAGCGTAACAACAACAGCAATGACATTAATAATGGCACTAATTCGAACACCATCCAAAATAATGGGCTTAGTAGCCATCATGAGATTGATCTTCCTGTGAACTCACCCAGATCAGAAGCTTTCAGAAGCACGGTTCTAGTGGATGGCTTTGAATCCGGTTTGGAACGGAAGACAGGTCAACATGTTAGCCAGAGAACTCACGGGGGTGTTGCTGCTAAAAGTTTGTTAAATCCTGGTTTTGTTTCTCTGGACTTTAGGCTAAGGGAGAAAAGGAAACTGGGACATTTGATGTTCATGATGTTCTGTGGTCTTTGCTTGTTTCTGGGTATTCTCAAGATCTGCATGAATGGTTGGTTTGGATCAGTCATCGAGACCAACGAATCACATCAGGATAAACCCGACTCCATTACAAGTAGAAATCAAGTGGATCAGAAATCTCATAATCTTAGATATAGGGAAGGGGAAAGTAGTATGGAGCGAACTCCGATGATGGAATCACGTGTAGTCGGGAGTCAAAATGGTGTGGAGTATTCAGAAATCTGGACGAAACCCGACAGCGAGAATTTTGCTCCTTGCATCGACGAGGGAAGGCGCCACAAAAAGCTAGATGCGAAGACGAATGGATACATTCTCGTAAATGCCAACGGTGGCTTGAATCAGATGAGATTTGGGATCTGTGATATGGTTGTGATTGCAAAGGTTATGAAAGCAGTGCTCGTCCTTCCTTCGCTCGATCATAAGTCTTATTGGGCAGATGAAAGTGGCTTTAAAGATCTGTTCAATTGGCAACACTTTCTTCAGACATTGGAGAACGATGTTCATATAGTAGAGACACTACCACCCGCGTACGCCGAATTAGTGCCCTTCAACAAAACACCAATTTCTTGGTCCAAGACTGGTTACTATAAAGCAGAGGTCCTACCACTGCTGAAGCAGCATAAGGTGATGTATTTTACTCACACGGATTCCCGGCTGGCTAACAATGGTCTCTCGAGTTCTATACAGAAGTTGAGATGTCGTGTCAATTTCGAAGCGTTGAAATATTCAGCTCCAATTGAAGAGCTGGGGAACACCTTGGATATGCTGGCATTTACAGGCTGCAGTCATAATTTGACAACAGCCGAAGACGATGAGCTGCGTAGAATGCGTTATGAAGTTGCCCATTGGAAAGAGAAGGAAATCAACGGGACGGAGAGAAGGTTGCTCGGTGGCTGCCCGCTGACCCCAAGGGAGACTTCTCTTTTGCTCAGAGGCTTGGGGTTTCCTTCCAGCACCAGAATATATTTGGTAGCTGGTGAGGCTTATGGAAATGGAAGTATGCAATATCTTAAGGATCATTTCCCCAATATATATTCCCATTCTACACTCTCCACAGAAGATGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTAGCTGGCATCGACTACGTCGTAGCCCTTCAAAGCGATGTTTTTATCTATACATATGATGGCAATATGGCGAAGGCAATTCAAGGTCACAGGCGTTTTGAGGGCTTCAAGAAGACCATAAGTCCAGACAAGGAGAATTTCGTCAAACTTGTCGATAACCTCGATGAAGGAAAGATATCGTGGAAAAAATTCAGTTCGAAAGTGAAAGCGCTTCATAAAAATCGAGCCGGGGCTCCATATCTTAGAGTGGCTGGAGAATTCCCAAAGTTGGAGGAGAGTTTTTATGCAAACCCCTATCCAGGATGCATTTGTGATAAAACCACAGAAAAGTCTCTGGTTAGAGAATACTTCATCGTCGAGAGGCCAACATCAGCTCCTGCAGGCTTCTCCAATGGCTCCCGCCGTTCCTCGCAACGCCTCCCTCTTCTATTGGGCCTTCGAGACAACAACCAAGCTCAAATCCATTCTAAGATCCAACGAGGAGAGGAGAAGGGAGAAGGGAGAAGGGTTTTAGTTATGGATACGAAGGAAGAGACAGGGAGCACACGTTGGGGTGCTTCACTTTTCCTCCAGACGACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCCGCTGCTGCTGCCGCATCCGAGGCTCGCTCTCCTCGTCCTTCTGTTATATATTCTTCAAAAGGCGACGATACCAACAGTCCACTCCAGAGATTGCAGCGTCAAGTTAATAAAGTTCTTAAAGGCTTTTCTAGTCCTCCGCAAGTCAAAACTGCAGGAACCTACAATCCTGAAGTTCTCACTACCCAGAAGCGTCAATGGGCCAATTTCCAGCTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCGACTAGGATTTTTGAGAGCATGGTTGTTGTTGGGCTGCACCCTAATTGTGACATTCAAGCACTTCAGAGGCAGTATGTTGCAAGGAAGTCTGAAGGTTCCGGGAGAGTGCGAACTGCTCTTAATAATAGTCAGAGTCAATCTCGGGTGGAACCACATCTTGAACCACAGGTCCTTTTTGTTTACCCTCCAGAGAAACAGTTACCGTGCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTCGAAAAAACTCCTTCCATGAGTGAGTTGAACGAGATTCTTCTTGGGCAGGAACACTTCAAGCAAAGTGACCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTACGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGCATCTGAGAAAGCACCTTCCTACTCATCCTTGAGCCGTTACATACTAACCACACGCAGATGCTATTGCATTCTATCTCGCTTGCCATTCTTCGAATTACATTTTGGTGTGTTGAATAGCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTATTTTGGATTTGGAATCCACAGAGAATTTGAGCAATGAAGAAGATTTGGCGGAAGACATCGGTTGCATGACTTTAGATCAGAGTGCAGCTGAAGACAGACACGAGGGAAAAGAGGAATATTCTCAAGGAATAATGAGTGATGAAACTCATCTTGAGCATCAAATGCACAATGGAAATTTTCAATGTCTAAAAAAGGGCATTAGTGATGATATAGTTGTCACACTCGATCGAGAACCAGAGGTCGTTACTGCCAAAACAGAATCTGTTACTGTACATAAGGAAAATCATGATATCGATGTTGATGATTTTACAAGAAACAATCAAGCGATTGATAGGCGTTTACCAAATGCGGTTCTTCCTCTCCTCCGTTATTATCAATATGAAAGCTCTGATTCGTCCTCAAGTTTTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGGAGTGATGCTGATGACACAGAGACAGAGGAGGCATCGTTTTCTGGCCAGGATGATTCCTCAGACCTACTTGAAATTCTTGAGTGGGCCAAGGAAAATAAGAATGGATCGTTACAAATCATATGCGAGTATTACCAGTTGCCTTACCCTGCTAGGGGCTGTTCTGTGAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGTGAAACAGTTCTACATGTTGCTGGCTCGACCATTGATCCAAGGTCATGCAGTACAAGTCTTGAATTAGCAGAGGCACACGGCGCTCTCATGGTAGAGGAAGAAGCAAATGCCTTATCAGTATGGACTGTTGCAAGCATGTGTGGTTCTTTACGCCTCGAGCATATTTTATCAATTTTAGCTGGAGTGCTGCTGGAGAAGCAGATCGTGATCGTTTGTTCCAATCTGGGTATCCTATCTGCTTCAGTTTTATCGATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGCTTGCTGATGCCAGTGTTACCAAATGATATGCTGGACTTTTTGGATGCCCCTGTTCCTTACATAGTCGGTGTGAAAAATAAAACCAGTGAAGTACAGTCGAAGCTGACCAATGCCATTTTGGTTGATGTGAACAAGAACCAGGTCAAGGCCTCAACAATACCTCAGCTGCCAAAACAAAAGGAGTTATTCTCATCGTTAAGACCGTATCACGCTGATCTAGTTGGAGAAAGTTATTTAGGGAGAAAGAGGCCAGTGCTTGAATGCACTGATGTGCAGGTTGAAGCCGCCAGGGGTTTCCTAAAAGTGCTAAGATTATACTTGGACTCTCTCTGTGCTAACCTCCGTTCACATACGATTACTAACGTACAATCGAATGACGATAAGGTTTCATTACTGTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGTCGTGATCGGCCATTTTTGAAGCTTTTTGTGGACACACAGTTGTTCTCTGTGCATACCGATCTCGTTCTCTCTTGCCTTTATCTTGTGGATTTCCGTAGAGATGTCAGAGACAAGGGTTGGCAGGCAGAACCGGAAGCTGCAGAGCGTTGCAGTCATAATATTATGAGCAGAGAGAGAAAGAAACAGAGGACTGAGGAAAAAACTCAAGATATGAGCGCACGAAACAGGCTCCCATTCACTGCAGCTCAATGGCAAGAGCTAGAACACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCTGATCTGCTCTACGCCATGAAGAGATCCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTTCGTGCAGATGGGTTCGGGGAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAAAAATGGAGATGCTCCAAAGAGGCATATCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAACCAACAACAACAATAACTGCTCTAACCTCTAATCCATCTACCCCACCCATCTCCTCCATCACCCACAACTCCACCGCTTCACTCAGCACCAACTCATTTCCCTCTGAAATCCATACCCATTCTTGTTTCAATACTCCTCCTCCTCACCCTTTTCTCTATCAACATGGCTCCTTCTCTAGGCCCCCTGGTTCTGCCCATTTGCAGCACAACTCCAACCCATCCTTACTTCTGGACCCTCCTGCAGATTACAGGCCCCCTGGTTCTGCCCATTTGCAGCACAACTCCAACCCATCCTTACTTCTGGACCCTCCTGCAGATTACAGAAGAAATAGGTACGTTTATGCGGGGAAGGAAGATGTTGATAAGCATCCATTTCTATCGGAAGAACATTCTGGGAACATGAGAGGCTTCTCCGCTTCGTCTATGGAAGATCCCTGGCAGCTAACTCCTCTGACAATGAGTTGTTCTTCCTCATCCCCCAGACACAAGAACTGCTCAGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGCGGTTCCCCTAAGCAAGTGAAGCAAGACGAGCATTACTACGCGGTGGGAAAATATAATGAGATGCAGAGTAAGATGGACAGGGAGAAACCGGAGAAGACTATGCATCACTTCTTTGGTGAATGGTCTCCTGAAGACAGGGAGTCGTGGGTTGATTTGGATGATAAGTCATCCAATACTGGCGNACCGGAGAAGACTATGCATCACTTCTTTGGTGAATGGTCTCCTAAAGACAGGGAGTCGTGGGTTGATTTGGATGATAAGTCATCCAATACTGGCGCAGTTTCTGAAACTCGGCTTTCAATGTCTATTCTTAACTCGTCGCAGCATGACTTCTCCTCCATTTTCAGTTCCAATAAGCATAATGAAAACTGA 5835 45.42 MVPQRHHNSNDGVSQRVNSPRFSGPITRRAHSFKRNNNSNDINNGTNSNTIQNNGLSSHHEIDLPVNSPRSEAFRSTVLVDGFESGLERKTGQHVSQRTHGGVAAKSLLNPGFVSLDFRLREKRKLGHLMFMMFCGLCLFLGILKICMNGWFGSVIETNESHQDKPDSITSRNQVDQKSHNLRYREGESSMERTPMMESRVVGSQNGVEYSEIWTKPDSENFAPCIDEGRRHKKLDAKTNGYILVNANGGLNQMRFGICDMVVIAKVMKAVLVLPSLDHKSYWADESGFKDLFNWQHFLQTLENDVHIVETLPPAYAELVPFNKTPISWSKTGYYKAEVLPLLKQHKVMYFTHTDSRLANNGLSSSIQKLRCRVNFEALKYSAPIEELGNTLDMLAFTGCSHNLTTAEDDELRRMRYEVAHWKEKEINGTERRLLGGCPLTPRETSLLLRGLGFPSSTRIYLVAGEAYGNGSMQYLKDHFPNIYSHSTLSTEDELNPFKNHQNMLAGIDYVVALQSDVFIYTYDGNMAKAIQGHRRFEGFKKTISPDKENFVKLVDNLDEGKISWKKFSSKVKALHKNRAGAPYLRVAGEFPKLEESFYANPYPGCICDKTTEKSLVREYFIVERPTSAPAGFSNGSRRSSQRLPLLLGLRDNNQAQIHSKIQRGEEKGEGRRVLVMDTKEETGSTRWGASLFLQTTEDVARAVAAAAAAAASEARSPRPSVIYSSKGDDTNSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYVARKSEGSGRVRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPCKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSASEKAPSYSSLSRYILTTRRCYCILSRLPFFELHFGVLNSIFTEERLQRLTKGIGILDLESTENLSNEEDLAEDIGCMTLDQSAAEDRHEGKEEYSQGIMSDETHLEHQMHNGNFQCLKKGISDDIVVTLDREPEVVTAKTESVTVHKENHDIDVDDFTRNNQAIDRRLPNAVLPLLRYYQYESSDSSSSFQGSPSEDRNFRSDADDTETEEASFSGQDDSSDLLEILEWAKENKNGSLQIICEYYQLPYPARGCSVKFHPLEHLHPLEYYRSGETVLHVAGSTIDPRSCSTSLELAEAHGALMVEEEANALSVWTVASMCGSLRLEHILSILAGVLLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAILVDVNKNQVKASTIPQLPKQKELFSSLRPYHADLVGESYLGRKRPVLECTDVQVEAARGFLKVLRLYLDSLCANLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKLFVDTQLFSVHTDLVLSCLYLVDFRRDVRDKGWQAEPEAAERCSHNIMSRERKKQRTEEKTQDMSARNRLPFTAAQWQELEHQALIFKYMVSGIPVPPDLLYAMKRSSLDTPFISRLFPHQYPDVGWNFVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKPTTTITALTSNPSTPPISSITHNSTASLSTNSFPSEIHTHSCFNTPPPHPFLYQHGSFSRPPGSAHLQHNSNPSLLLDPPADYRPPGSAHLQHNSNPSLLLDPPADYRRNRYVYAGKEDVDKHPFLSEEHSGNMRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEHYYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPEDRESWVDLDDKSSNTGXPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGAVSETRLSMSILNSSQHDFSSIFSSNKHNEN 1944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9762295 9777327 - Cp4.1LG11g12030.1 Cpe11g01195 477989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01195 1944 PANTHER DENN (AEX-3) DOMAIN-CONTAINING PROTEIN 677 1472 - -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 1 67 - -
Cpe11g01195 1944 Pfam DENN (AEX-3) domain 1249 1350 IPR001194 -
Cpe11g01195 1944 Gene3D - 781 988 - -
Cpe11g01195 1944 CDD O-FucT_plant 242 543 IPR024709 -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 178 193 - -
Cpe11g01195 1944 ProSiteProfiles WRC domain profile. 1593 1637 IPR014977 -
Cpe11g01195 1944 SMART DENN_cls 951 1350 IPR001194 -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 1121 1152 - -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 162 197 - -
Cpe11g01195 1944 Pfam WRC 1594 1636 IPR014977 -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 30 61 - -
Cpe11g01195 1944 Gene3D - 1246 1412 IPR043153 -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 1700 1714 - -
Cpe11g01195 1944 ProSiteProfiles Tripartite DENN domain profile. 826 1481 IPR037516 -
Cpe11g01195 1944 ProSiteProfiles QLQ domain profile. 1525 1560 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe11g01195 1944 SMART QLQ_2 1524 1560 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe11g01195 1944 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 677 1472 - -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 1 22 - -
Cpe11g01195 1944 Pfam GDP-fucose protein O-fucosyltransferase 242 391 IPR019378 -
Cpe11g01195 1944 Pfam QLQ 1525 1556 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe11g01195 1944 Pfam uDENN domain 844 921 IPR005113 -
Cpe11g01195 1944 MobiDBLite consensus disorder prediction 1691 1743 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01195 - - - cmax:111493653 1537.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02530 Cpe-Chr1:20742957 Cpe11g01195 Cpe-Chr11:9762295 2.01E-141 dispersed
Cpe03g00075 Cpe-Chr3:408644 Cpe11g01195 Cpe-Chr11:9762295 1.21E-180 dispersed
Cpe07g01065 Cpe-Chr7:9480069 Cpe11g01195 Cpe-Chr11:9762295 7.64E-36 dispersed
Cpe08g01199 Cpe-Chr8:8804718 Cpe11g01195 Cpe-Chr11:9762295 5.57E-178 dispersed
Cpe11g01195 Cpe-Chr11:9762295 Cpe12g01166 Cpe-Chr12:9575888 2.54E-169 dispersed
Cpe19g00691 Cpe-Chr19:5432617 Cpe11g01195 Cpe-Chr11:9762295 1.61E-35 dispersed
Cpe07g01064 Cpe-Chr7:9471551 Cpe11g01195 Cpe-Chr11:9762295 0 transposed
Cpe11g01195 Cpe-Chr11:9762295 Cpe18g00326 Cpe-Chr18:4738529 4.46E-95 wgd
Cpe11g01195 Cpe-Chr11:9762295 Cpe02g01745 Cpe-Chr2:14257197 2.83E-62 wgd
Cpe11g01195 Cpe-Chr11:9762295 Cpe03g01046 Cpe-Chr3:8513101 4.88E-65 wgd
Cpe11g01195 Cpe-Chr11:9762295 Cpe04g01028 Cpe-Chr4:9123274 9.95E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g86 . Blo16g00961 . Bda11g01018 . . . . . . Cma05g01423 . Car05g01339 . . . . . . . . . . . Cla11g00135 Cam11g0156 Cec11g0157 . . Cmu11g0146 Cre11g0643 . . . . . Csa02g00017 Chy05g01470 . . . . . . Bpe13g01230 . . . Cmo05g01419 . . . . . Cpe11g01195 . . . . . . . . . . . . . . . Lsi11g00159 . . Cme05g02072
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01033 CCT 1 413 GRF Transcription Factor Family AT3G52910 50.4 2.2e-67 253.4
Cpe02g01745 CST 11 110 GRF Transcription Factor Family AT3G13960 82.0 6.7e-51 198.7
Cpe11g01195 . 1523 1627 GRF Transcription Factor Family AT3G13960 73.3 6.7e-43 172.2
Cpe18g00326 CST 8 110 GRF Transcription Factor Family AT3G13960 71.8 5.7e-42 169.1
Cpe04g01028 CST 8 110 GRF Transcription Factor Family AT3G13960 72.8 7.4e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003568 1 5 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50283 PF10250 O-FucT 9.60E-28 CL0113 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g01195 Cpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0