Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g01202 ATGGGGATGAAAGCTCCCCCAAATGGGTTTCTGCCCAATTCTGGAGAAGGTGAAAGGAAGAACATCAATTCTGAGCTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCTTCGATGAATAAGGAGACTGATTTCATTCCAAGCTACCCTAACCTTCCTTCTAAGTTGATCTGCATGCTCCATAACGTCACGTTACATGCTGATCTTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATACGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAATTCTTCTGTAAAACTCTAACAGCTAGCGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCGTGGACATTCAGACATATTTACCGCGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCAGCTGCAAATAACAGTCCTTTTACCATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAGGCAATGTATGCACAAGTTTCCCTTGGCATGCGATTTAGGATGATGTTTGAAACCGAGGAGTCGGGAGTACGTAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTACGATGGAAAAATTCACAATGGCGCAATCTTCAGGTCGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAGGTTGAGCCTGTTGTGACTCCTTTTTACATATGTCCACCTCCATTCTTCAGGCCCAAATTCCCTAAACAACCAGGGATGCCAGACGATGAATCTGAGATTGAAAATGCTTTTAAGAGAGCGATGCCATGGTTTGGTGATGAGTTCGGCATGAAAGATGCGTCAAGCTCGATCTTTCCTGGTTTAAGCTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTCTTACTAATGACGAGTCATCCAAATTATTGAGTTTTCAAGCACCACTAATTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGGAGCTTACAAACAGAAAAACATAACAGCAATGGCTTTTCAATTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTACAAACAGAAAAACATAACAGCAATGGCTTTTCAAGTTTAGGCCTCATGCAGTCCCAGCAGGCTCCTATAACCCATTCCCATAACCAATTCAAACCAACCATGGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGCATCAAACATGCTCAATAAGAACCAACAAGGAGCAGCCACACTGGGGGGAGACCCAGTAGCTGAGCCTGCAACTAACCTGGCTCAGGACCTACAAAGAAAACCTGATTTGAGAATCAAACATGAGTTTCCTAGCTCAAAAGGATTGGACCAACTAAAGTACAAAGGCACTGTTCCTGATCAGTTAGAAGCGTGTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCGACATGTTTGGATAATGATGTACAATCACATCCACGAAACAATATCCCTTTCAGTAATAGCATGGATGGGTTGGCACCAGATACCTTATTATCGAGGGGATACGACTCGCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGTGGTGTGCCTAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTCCCAAACTTGCCTTTTAAGTCTGACTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGACTGTGGGCAAACCACAGTCAACGTATGCGTACATACACAAAGGGAAATCATAGGACATTTGTTGTGTCTAGGAACGAGGAAGAGATGAGGGACTTGGTCATTGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCACGAAACCGATATACTTCTAGTTGGTGATGATCCTTGGGAAGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCTTGGAGAGGGCAGTATGATGATAACTCGGCTGCATCATTCAACCGATAA 2544 44.54 MGMKAPPNGFLPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPSYPNLPSKLICMLHNVTLHADLETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESEIENAFKRAMPWFGDEFGMKDASSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDESSKLLSFQAPLIYHHCLCPISSSSILVEGAYKQKNITAMAFQLPPLPLSNQQQFNTSGGSLQTEKHNSNGFSSLGLMQSQQAPITHSHNQFKPTMAIRAYSGLTDGDAPSCSTSPSTNNCQVSASNMLNKNQQGAATLGGDPVAEPATNLAQDLQRKPDLRIKHEFPSSKGLDQLKYKGTVPDQLEACSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSMDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKSDCSNDVNVNEAGALSSGLWANHSQRMRTYTKGNHRTFVVSRNEEEMRDLVIDPQRTDWKLVYVDHETDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9801668 9808616 - Cp4.1LG11g12020.1 Cpe11g01202 477996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g01202 847 Gene3D - 126 203 IPR015300 -
Cpe11g01202 847 PANTHER AUXIN RESPONSE FACTOR 19 186 437 - -
Cpe11g01202 847 MobiDBLite consensus disorder prediction 475 497 - -
Cpe11g01202 847 MobiDBLite consensus disorder prediction 825 847 - -
Cpe11g01202 847 SUPERFAMILY DNA-binding pseudobarrel domain 118 226 IPR015300 -
Cpe11g01202 847 Pfam B3 DNA binding domain 128 193 IPR003340 GO:0003677
Cpe11g01202 847 SUPERFAMILY CAD & PB1 domains 729 798 - -
Cpe11g01202 847 Pfam Auxin response factor 223 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe11g01202 847 Pfam AUX/IAA family 750 806 IPR033389 -
Cpe11g01202 847 SMART B3_2 128 223 IPR003340 GO:0003677
Cpe11g01202 847 Gene3D - 734 809 - -
Cpe11g01202 847 Gene3D - 260 331 - -
Cpe11g01202 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 186 437 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe11g01202 847 CDD B3_DNA 127 194 IPR003340 GO:0003677
Cpe11g01202 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 185 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe11g01202 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 474 835 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe11g01202 847 PANTHER AUXIN RESPONSE FACTOR 19 3 185 - -
Cpe11g01202 847 PANTHER AUXIN RESPONSE FACTOR 19 474 835 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g01081 Cpe11g01202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00079 Cpe-Chr6:395016 Cpe11g01202 Cpe-Chr11:9801668 1.69E-20 dispersed
Cpe11g00650 Cpe-Chr11:4296398 Cpe11g01202 Cpe-Chr11:9801668 2.60E-40 dispersed
Cpe11g01202 Cpe-Chr11:9801668 Cpe20g00545 Cpe-Chr20:3182872 1.25E-158 dispersed
Cpe11g01202 Cpe-Chr11:9801668 Cpe07g01081 Cpe-Chr7:9561062 1.76E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50284 PF02309 AUX_IAA 1.50E-08 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g01202 - K14486 aof:109844334 848.58