Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g01202 | ATGGGGATGAAAGCTCCCCCAAATGGGTTTCTGCCCAATTCTGGAGAAGGTGAAAGGAAGAACATCAATTCTGAGCTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCTTCGATGAATAAGGAGACTGATTTCATTCCAAGCTACCCTAACCTTCCTTCTAAGTTGATCTGCATGCTCCATAACGTCACGTTACATGCTGATCTTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATACGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAATTCTTCTGTAAAACTCTAACAGCTAGCGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCGTGGACATTCAGACATATTTACCGCGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCAGCTGCAAATAACAGTCCTTTTACCATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAGGCAATGTATGCACAAGTTTCCCTTGGCATGCGATTTAGGATGATGTTTGAAACCGAGGAGTCGGGAGTACGTAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTACGATGGAAAAATTCACAATGGCGCAATCTTCAGGTCGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAGGTTGAGCCTGTTGTGACTCCTTTTTACATATGTCCACCTCCATTCTTCAGGCCCAAATTCCCTAAACAACCAGGGATGCCAGACGATGAATCTGAGATTGAAAATGCTTTTAAGAGAGCGATGCCATGGTTTGGTGATGAGTTCGGCATGAAAGATGCGTCAAGCTCGATCTTTCCTGGTTTAAGCTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTCTTACTAATGACGAGTCATCCAAATTATTGAGTTTTCAAGCACCACTAATTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGGAGCTTACAAACAGAAAAACATAACAGCAATGGCTTTTCAATTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTACAAACAGAAAAACATAACAGCAATGGCTTTTCAAGTTTAGGCCTCATGCAGTCCCAGCAGGCTCCTATAACCCATTCCCATAACCAATTCAAACCAACCATGGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGCATCAAACATGCTCAATAAGAACCAACAAGGAGCAGCCACACTGGGGGGAGACCCAGTAGCTGAGCCTGCAACTAACCTGGCTCAGGACCTACAAAGAAAACCTGATTTGAGAATCAAACATGAGTTTCCTAGCTCAAAAGGATTGGACCAACTAAAGTACAAAGGCACTGTTCCTGATCAGTTAGAAGCGTGTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCGACATGTTTGGATAATGATGTACAATCACATCCACGAAACAATATCCCTTTCAGTAATAGCATGGATGGGTTGGCACCAGATACCTTATTATCGAGGGGATACGACTCGCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGTGGTGTGCCTAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTCCCAAACTTGCCTTTTAAGTCTGACTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGACTGTGGGCAAACCACAGTCAACGTATGCGTACATACACAAAGGGAAATCATAGGACATTTGTTGTGTCTAGGAACGAGGAAGAGATGAGGGACTTGGTCATTGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCACGAAACCGATATACTTCTAGTTGGTGATGATCCTTGGGAAGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCTTGGAGAGGGCAGTATGATGATAACTCGGCTGCATCATTCAACCGATAA | 2544 | 44.54 | MGMKAPPNGFLPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPSYPNLPSKLICMLHNVTLHADLETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESEIENAFKRAMPWFGDEFGMKDASSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDESSKLLSFQAPLIYHHCLCPISSSSILVEGAYKQKNITAMAFQLPPLPLSNQQQFNTSGGSLQTEKHNSNGFSSLGLMQSQQAPITHSHNQFKPTMAIRAYSGLTDGDAPSCSTSPSTNNCQVSASNMLNKNQQGAATLGGDPVAEPATNLAQDLQRKPDLRIKHEFPSSKGLDQLKYKGTVPDQLEACSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSMDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKSDCSNDVNVNEAGALSSGLWANHSQRMRTYTKGNHRTFVVSRNEEEMRDLVIDPQRTDWKLVYVDHETDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR | 847 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9801668 | 9808616 | - | Cp4.1LG11g12020.1 | Cpe11g01202 | 477996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g01202 | 847 | Gene3D | - | 126 | 203 | IPR015300 | - | |
Cpe11g01202 | 847 | PANTHER | AUXIN RESPONSE FACTOR 19 | 186 | 437 | - | - | |
Cpe11g01202 | 847 | MobiDBLite | consensus disorder prediction | 475 | 497 | - | - | |
Cpe11g01202 | 847 | MobiDBLite | consensus disorder prediction | 825 | 847 | - | - | |
Cpe11g01202 | 847 | SUPERFAMILY | DNA-binding pseudobarrel domain | 118 | 226 | IPR015300 | - | |
Cpe11g01202 | 847 | Pfam | B3 DNA binding domain | 128 | 193 | IPR003340 | GO:0003677 | |
Cpe11g01202 | 847 | SUPERFAMILY | CAD & PB1 domains | 729 | 798 | - | - | |
Cpe11g01202 | 847 | Pfam | Auxin response factor | 223 | 305 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cpe11g01202 | 847 | Pfam | AUX/IAA family | 750 | 806 | IPR033389 | - | |
Cpe11g01202 | 847 | SMART | B3_2 | 128 | 223 | IPR003340 | GO:0003677 | |
Cpe11g01202 | 847 | Gene3D | - | 734 | 809 | - | - | |
Cpe11g01202 | 847 | Gene3D | - | 260 | 331 | - | - | |
Cpe11g01202 | 847 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 186 | 437 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe11g01202 | 847 | CDD | B3_DNA | 127 | 194 | IPR003340 | GO:0003677 | |
Cpe11g01202 | 847 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 3 | 185 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe11g01202 | 847 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 474 | 835 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe11g01202 | 847 | PANTHER | AUXIN RESPONSE FACTOR 19 | 3 | 185 | - | - | |
Cpe11g01202 | 847 | PANTHER | AUXIN RESPONSE FACTOR 19 | 474 | 835 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g01081 | Cpe11g01202 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00079 | Cpe-Chr6:395016 | Cpe11g01202 | Cpe-Chr11:9801668 | 1.69E-20 | dispersed | |
Cpe11g00650 | Cpe-Chr11:4296398 | Cpe11g01202 | Cpe-Chr11:9801668 | 2.60E-40 | dispersed | |
Cpe11g01202 | Cpe-Chr11:9801668 | Cpe20g00545 | Cpe-Chr20:3182872 | 1.25E-158 | dispersed | |
Cpe11g01202 | Cpe-Chr11:9801668 | Cpe07g01081 | Cpe-Chr7:9561062 | 1.76E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50284 | PF02309 | AUX_IAA | 1.50E-08 | CL0072 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g01202 | - | K14486 | aof:109844334 | 848.58 |