Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00003 ATGGACAATTACGGTTCTTCCCCTTCATATCCATACCACCATCCATATGCATACCCTCGTCCAGTTCCTCCTCAATACCCACCGCCTCCTCAATATCCACCTCCTCCTCAACATCCACCTCCTCCTCATTATACGCATCCAAATTCAGATCCATATGCTCGTCCTCCGTACCCTTACCCGTATGATCCTTCACATGCCTCTGTATTTGCATATCCCCCACCCCCATCTCATTCTGGCCAAGTAGAGTATTTTCAACATCCACCTCCACATTCTGGGCCTGTACCTTCCCCATATTCTTACGGTGATGCCTCTTATACTAATGATAGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTACATCCCCATATCGGTATGAAGAATCTAGTACATACCCTCCCCCAGAAACTCAATACCCACCACCCCCTTCGCGAGTAAATAACTCCTCTGGCCACTATGATAGCACTGATTCGGTATCGCCTGGCTCTTCTGCATACCCGCCTTTGGATGACCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAACCTGGTACATACCCTCCCCCAGAAAGTCAATACCCACCACCCCCTTCACGAGCAAATAGCTTCTCTGGCCACTATAATGGCACTGATTCCTCATCACCTGTCTCTTATGCATACCCGCCTCTGGATGACCTTTTGGGTAATGTACATTTGTCTGATCATCAACCTACTTCTCCTGCATCACCTTCTGCGCTTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAGTTATAAGATATGATCGGCGCGACCGATTTTATGGCTTTCCTAATTCATCATTTTCTAGTTTCGATACGGGGAATTCATATCAAATGGCTTCATCCAACCAACCTTCATTTTCCCATTCAAGCTCATTCGGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAGGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAGACCTTGGGGGATATGTTTGCAAAATTACCTGGGAATATGAGCAACAAAGTTGAAGGACATGTGAGTCATAAGATCACTAGTGATCCTTACGTTTCGATCTATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGAATGGAGGCAGCATTTCTATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCGCAGCTAATAGGAACTGTAACAATTCCTGCAGAACAAATATATGCAGGGTCTGTAGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTTCTCTAACTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTACCAGGGGGTTCCTGATACATATTTCCCCCTCCGAAAGGGTGGAGCTGTCACTCTGTACCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTATATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGGTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGATTTTTCAAACAATCCTCTGTACAAGTGATACTTTGTCCTCGGATGGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGGAAGTTGGAACTATCTATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATAATCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGTACTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGTCCAGCAGCATATGATGTTTTGACCAATTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAAAAGTTGAAATCATATGATGATGCTTTGCTGCGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCATACTGTAACTACGAAGATGATCCTGAATCATGGCATGTGCAGATTTTTCGTTCAATTGATTCAAGTTCTGTTAAAGATTTCCCGAAGGACCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACACTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGGAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGCGTCCCAACTGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGAGGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGATGTGGATGGAAATGATCCTTTATCTTCTGGAAGCCCTAGTGCAGAAAACTCCCCTCAGGCACTTAGTCGAAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTGATTTTGGGATCTGCTAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACATGGGCAAAGAAGCGTTCACGTCCTCGTGGGCAGATCTATGGATATAGGATGTCGTTGTGGGCGGAGCATACAGGAACGATGGAAGAGTGTTTCAATGAACCGGAGAGCCTGGAATGCGTGAGAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGAGGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAAATCCCTTCCTGGACATGAAAATTTTCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGGATTCAGGAGAACCTGACTATCTAA 3546 43.54 MDNYGSSPSYPYHHPYAYPRPVPPQYPPPPQYPPPPQHPPPPHYTHPNSDPYARPPYPYPYDPSHASVFAYPPPPSHSGQVEYFQHPPPHSGPVPSPYSYGDASYTNDSARPSIQYHNNFQPGTSPYRYEESSTYPPPETQYPPPPSRVNNSSGHYDSTDSVSPGSSAYPPLDDPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQISRYDRFTSNYKNEEPGTYPPPESQYPPPPSRANSFSGHYNGTDSSSPVSYAYPPLDDLLGNVHLSDHQPTSPASPSALAQPSVSLLSHSPQVIRYDRRDRFYGFPNSSFSSFDTGNSYQMASSNQPSFSHSSSFGGSQHSQNLQIVPLHSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKVEGHVSHKITSDPYVSIYVANAVIGRTFVISNNENPEWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVTIPAEQIYAGSVVEGTFPILLGGKPCKPGASLTISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKQSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPSHPIFRTLQTVHKDDYHNPTYTGSTVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIHDIIGISEAYCNYEDDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRGNERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREDVDGNDPLSSGSPSAENSPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWAKKRSRPRGQIYGYRMSLWAEHTGTMEECFNEPESLECVRRVRTMGELNWKQFAADEVTEMRGHLLKYPVEVDRRGRVKSLPGHENFPDVGGKIVGSFLGIQENLTI 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10623 22975 + Cp4.1LG12g00010.1 Cpe12g00003 478000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00003 1181 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1027 1054 IPR001736 GO:0003824
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 197 223 - -
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 1 291 - -
Cpe12g00003 1181 SUPERFAMILY Phospholipase D/nuclease 535 793 - -
Cpe12g00003 1181 Pfam Phospholipase D Active site motif 1028 1054 IPR001736 GO:0003824
Cpe12g00003 1181 Pfam Phospholipase D Active site motif 695 729 IPR001736 GO:0003824
Cpe12g00003 1181 Pfam C2 domain 370 496 IPR000008 -
Cpe12g00003 1181 Gene3D C2 domain 365 513 IPR035892 -
Cpe12g00003 1181 ProSiteProfiles C2 domain profile. 348 494 IPR000008 -
Cpe12g00003 1181 SMART C2_3c 371 493 IPR000008 -
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 146 166 - -
Cpe12g00003 1181 CDD C2_plant_PLD 364 516 - -
Cpe12g00003 1181 PANTHER PHOSPHOLIPASE D 271 1181 IPR015679 -
Cpe12g00003 1181 Pfam Phospholipase D C terminal 1101 1171 IPR024632 -
Cpe12g00003 1181 SMART pld_4 1027 1054 IPR001736 GO:0003824
Cpe12g00003 1181 SMART pld_4 694 729 IPR001736 GO:0003824
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 100 136 - -
Cpe12g00003 1181 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 694 729 IPR001736 GO:0003824
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 273 291 - -
Cpe12g00003 1181 Gene3D Endonuclease Chain A 572 807 - -
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 238 258 - -
Cpe12g00003 1181 Gene3D Endonuclease Chain A 842 1076 - -
Cpe12g00003 1181 MobiDBLite consensus disorder prediction 14 70 - -
Cpe12g00003 1181 PANTHER PHOSPHOLIPASE D ALPHA 1 271 1181 - -
Cpe12g00003 1181 SUPERFAMILY Phospholipase D/nuclease 807 1113 - -
Cpe12g00003 1181 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 368 518 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00694 Cpe-Chr10:3992957 Cpe12g00003 Cpe-Chr12:10623 0 dispersed
Cpe11g00275 Cpe-Chr11:1476758 Cpe12g00003 Cpe-Chr12:10623 0 dispersed
Cpe12g00003 Cpe-Chr12:10623 Cpe19g00883 Cpe-Chr19:6467980 0 dispersed
Cpe02g01652 Cpe-Chr2:13756953 Cpe12g00003 Cpe-Chr12:10623 0 transposed
Cpe08g00791 Cpe-Chr8:6274287 Cpe12g00003 Cpe-Chr12:10623 0 transposed
Cpe17g00574 Cpe-Chr17:4702323 Cpe12g00003 Cpe-Chr12:10623 0 transposed
Cpe12g00003 Cpe-Chr12:10623 Cpe17g00327 Cpe-Chr17:2226890 1.27E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00003 K01115 - csv:101218942 1809.27