Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00003 | ATGGACAATTACGGTTCTTCCCCTTCATATCCATACCACCATCCATATGCATACCCTCGTCCAGTTCCTCCTCAATACCCACCGCCTCCTCAATATCCACCTCCTCCTCAACATCCACCTCCTCCTCATTATACGCATCCAAATTCAGATCCATATGCTCGTCCTCCGTACCCTTACCCGTATGATCCTTCACATGCCTCTGTATTTGCATATCCCCCACCCCCATCTCATTCTGGCCAAGTAGAGTATTTTCAACATCCACCTCCACATTCTGGGCCTGTACCTTCCCCATATTCTTACGGTGATGCCTCTTATACTAATGATAGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTACATCCCCATATCGGTATGAAGAATCTAGTACATACCCTCCCCCAGAAACTCAATACCCACCACCCCCTTCGCGAGTAAATAACTCCTCTGGCCACTATGATAGCACTGATTCGGTATCGCCTGGCTCTTCTGCATACCCGCCTTTGGATGACCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAACCTGGTACATACCCTCCCCCAGAAAGTCAATACCCACCACCCCCTTCACGAGCAAATAGCTTCTCTGGCCACTATAATGGCACTGATTCCTCATCACCTGTCTCTTATGCATACCCGCCTCTGGATGACCTTTTGGGTAATGTACATTTGTCTGATCATCAACCTACTTCTCCTGCATCACCTTCTGCGCTTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAGTTATAAGATATGATCGGCGCGACCGATTTTATGGCTTTCCTAATTCATCATTTTCTAGTTTCGATACGGGGAATTCATATCAAATGGCTTCATCCAACCAACCTTCATTTTCCCATTCAAGCTCATTCGGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAGGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAGACCTTGGGGGATATGTTTGCAAAATTACCTGGGAATATGAGCAACAAAGTTGAAGGACATGTGAGTCATAAGATCACTAGTGATCCTTACGTTTCGATCTATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGAATGGAGGCAGCATTTCTATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCGCAGCTAATAGGAACTGTAACAATTCCTGCAGAACAAATATATGCAGGGTCTGTAGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTTCTCTAACTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTACCAGGGGGTTCCTGATACATATTTCCCCCTCCGAAAGGGTGGAGCTGTCACTCTGTACCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTATATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGGTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGATTTTTCAAACAATCCTCTGTACAAGTGATACTTTGTCCTCGGATGGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGGAAGTTGGAACTATCTATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATAATCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGTACTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGTCCAGCAGCATATGATGTTTTGACCAATTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAAAAGTTGAAATCATATGATGATGCTTTGCTGCGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCATACTGTAACTACGAAGATGATCCTGAATCATGGCATGTGCAGATTTTTCGTTCAATTGATTCAAGTTCTGTTAAAGATTTCCCGAAGGACCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACACTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGGAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGCGTCCCAACTGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGAGGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGATGTGGATGGAAATGATCCTTTATCTTCTGGAAGCCCTAGTGCAGAAAACTCCCCTCAGGCACTTAGTCGAAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTGATTTTGGGATCTGCTAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACATGGGCAAAGAAGCGTTCACGTCCTCGTGGGCAGATCTATGGATATAGGATGTCGTTGTGGGCGGAGCATACAGGAACGATGGAAGAGTGTTTCAATGAACCGGAGAGCCTGGAATGCGTGAGAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGAGGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAAATCCCTTCCTGGACATGAAAATTTTCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGGATTCAGGAGAACCTGACTATCTAA | 3546 | 43.54 | MDNYGSSPSYPYHHPYAYPRPVPPQYPPPPQYPPPPQHPPPPHYTHPNSDPYARPPYPYPYDPSHASVFAYPPPPSHSGQVEYFQHPPPHSGPVPSPYSYGDASYTNDSARPSIQYHNNFQPGTSPYRYEESSTYPPPETQYPPPPSRVNNSSGHYDSTDSVSPGSSAYPPLDDPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQISRYDRFTSNYKNEEPGTYPPPESQYPPPPSRANSFSGHYNGTDSSSPVSYAYPPLDDLLGNVHLSDHQPTSPASPSALAQPSVSLLSHSPQVIRYDRRDRFYGFPNSSFSSFDTGNSYQMASSNQPSFSHSSSFGGSQHSQNLQIVPLHSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKVEGHVSHKITSDPYVSIYVANAVIGRTFVISNNENPEWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVTIPAEQIYAGSVVEGTFPILLGGKPCKPGASLTISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKQSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPSHPIFRTLQTVHKDDYHNPTYTGSTVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIHDIIGISEAYCNYEDDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRGNERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREDVDGNDPLSSGSPSAENSPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWAKKRSRPRGQIYGYRMSLWAEHTGTMEECFNEPESLECVRRVRTMGELNWKQFAADEVTEMRGHLLKYPVEVDRRGRVKSLPGHENFPDVGGKIVGSFLGIQENLTI | 1181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10623 | 22975 | + | Cp4.1LG12g00010.1 | Cpe12g00003 | 478000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00003 | 1181 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 1027 | 1054 | IPR001736 | GO:0003824 | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 197 | 223 | - | - | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 1 | 291 | - | - | |
Cpe12g00003 | 1181 | SUPERFAMILY | Phospholipase D/nuclease | 535 | 793 | - | - | |
Cpe12g00003 | 1181 | Pfam | Phospholipase D Active site motif | 1028 | 1054 | IPR001736 | GO:0003824 | |
Cpe12g00003 | 1181 | Pfam | Phospholipase D Active site motif | 695 | 729 | IPR001736 | GO:0003824 | |
Cpe12g00003 | 1181 | Pfam | C2 domain | 370 | 496 | IPR000008 | - | |
Cpe12g00003 | 1181 | Gene3D | C2 domain | 365 | 513 | IPR035892 | - | |
Cpe12g00003 | 1181 | ProSiteProfiles | C2 domain profile. | 348 | 494 | IPR000008 | - | |
Cpe12g00003 | 1181 | SMART | C2_3c | 371 | 493 | IPR000008 | - | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
Cpe12g00003 | 1181 | CDD | C2_plant_PLD | 364 | 516 | - | - | |
Cpe12g00003 | 1181 | PANTHER | PHOSPHOLIPASE D | 271 | 1181 | IPR015679 | - | |
Cpe12g00003 | 1181 | Pfam | Phospholipase D C terminal | 1101 | 1171 | IPR024632 | - | |
Cpe12g00003 | 1181 | SMART | pld_4 | 1027 | 1054 | IPR001736 | GO:0003824 | |
Cpe12g00003 | 1181 | SMART | pld_4 | 694 | 729 | IPR001736 | GO:0003824 | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 100 | 136 | - | - | |
Cpe12g00003 | 1181 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 694 | 729 | IPR001736 | GO:0003824 | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 273 | 291 | - | - | |
Cpe12g00003 | 1181 | Gene3D | Endonuclease Chain A | 572 | 807 | - | - | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 238 | 258 | - | - | |
Cpe12g00003 | 1181 | Gene3D | Endonuclease Chain A | 842 | 1076 | - | - | |
Cpe12g00003 | 1181 | MobiDBLite | consensus disorder prediction | 14 | 70 | - | - | |
Cpe12g00003 | 1181 | PANTHER | PHOSPHOLIPASE D ALPHA 1 | 271 | 1181 | - | - | |
Cpe12g00003 | 1181 | SUPERFAMILY | Phospholipase D/nuclease | 807 | 1113 | - | - | |
Cpe12g00003 | 1181 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 368 | 518 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00694 | Cpe-Chr10:3992957 | Cpe12g00003 | Cpe-Chr12:10623 | 0 | dispersed | |
Cpe11g00275 | Cpe-Chr11:1476758 | Cpe12g00003 | Cpe-Chr12:10623 | 0 | dispersed | |
Cpe12g00003 | Cpe-Chr12:10623 | Cpe19g00883 | Cpe-Chr19:6467980 | 0 | dispersed | |
Cpe02g01652 | Cpe-Chr2:13756953 | Cpe12g00003 | Cpe-Chr12:10623 | 0 | transposed | |
Cpe08g00791 | Cpe-Chr8:6274287 | Cpe12g00003 | Cpe-Chr12:10623 | 0 | transposed | |
Cpe17g00574 | Cpe-Chr17:4702323 | Cpe12g00003 | Cpe-Chr12:10623 | 0 | transposed | |
Cpe12g00003 | Cpe-Chr12:10623 | Cpe17g00327 | Cpe-Chr17:2226890 | 1.27E-67 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00003 | K01115 | - | csv:101218942 | 1809.27 |