Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe12g00023 | ATGGATAGAATTACACCCCACACTCGCCCTCTTCCACCTCCTTTCCTCTCCAAAGATCTTCATCTCCACCACCGCCAAAACTCCGATGACGACCAAAGCGGCGGAGCTAAAAGGGATAGGGAGGAGGAGAATCCCATCACCGCGGCGGAGACTAAAGAATTATCCAATTCTTCTTCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATCACTAGAGACAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCCGACATCGTGGATACCCTCGCCGCCTTCGCGCGTAGGCGTCAGCGCGGCGTTTGTATTCTAAGCGCCACTGGAACCGTCGCCAACGTCACTCTCCGACAGCCAGCCTCCCCCGCCGCTGTCATCTCCTTACATGGCAGATTTGAAATTCTCTCCCTATCCGGCTCCTTCCTCCCGCCGCCAGCTCCCCCTGCCGCCTCCGGGCTGACCGTCTACTTAGCCGGTGGGCAGGGGCAGGTCGTCGGCGGGAATGTAATCGGCCCACTTTTGGCGTCCGGTCCGGTGATTATTATGGCAGCTTCATTTGGAAATGCTGCATATGAACGGCTACCCATTGACGAGGAAGACGAAACTTCACCGGCGGCGGAGATGGCGGGAGAACAGGCAGCACCGCCGCCGCCGCCGCCGCCGCAATTGTTGGGGGATCCGAATGGGGGATTGTTTCATGGTGTGAATTCTTCATGCCAATTAGCGGCGGAGGCGGCGTATTGGGGAGGAGGTCGGCCACCGTTTTGA | 807 | 58.12 | MDRITPHTRPLPPPFLSKDLHLHHRQNSDDDQSGGAKRDREEENPITAAETKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDTLAAFARRRQRGVCILSATGTVANVTLRQPASPAAVISLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLLASGPVIIMAASFGNAAYERLPIDEEDETSPAAEMAGEQAAPPPPPPPQLLGDPNGGLFHGVNSSCQLAAEAAYWGGGRPPF | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 113824 | 114630 | - | Cp4.1LG12g00240.1 | Cpe12g00023 | 478020 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe12g00023 | 268 | MobiDBLite | consensus disorder prediction | 213 | 244 | - | - | |
| Cpe12g00023 | 268 | Gene3D | - | 87 | 216 | - | - | |
| Cpe12g00023 | 268 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
| Cpe12g00023 | 268 | CDD | DUF296 | 88 | 199 | IPR005175 | - | |
| Cpe12g00023 | 268 | MobiDBLite | consensus disorder prediction | 224 | 238 | - | - | |
| Cpe12g00023 | 268 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 5 | 268 | IPR014476 | GO:0003680 | |
| Cpe12g00023 | 268 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 | 5 | 268 | - | - | |
| Cpe12g00023 | 268 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 84 | 213 | - | - | |
| Cpe12g00023 | 268 | MobiDBLite | consensus disorder prediction | 49 | 64 | - | - | |
| Cpe12g00023 | 268 | ProSiteProfiles | PPC domain profile profile. | 84 | 221 | IPR005175 | - | |
| Cpe12g00023 | 268 | MobiDBLite | consensus disorder prediction | 18 | 48 | - | - | |
| Cpe12g00023 | 268 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 88 | 200 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00276 | Cpe-Chr5:1542453 | Cpe12g00023 | Cpe-Chr12:113824 | 2.30E-92 | dispersed | |
| Cpe08g00320 | Cpe-Chr8:2023409 | Cpe12g00023 | Cpe-Chr12:113824 | 6.95E-66 | dispersed | |
| Cpe12g00023 | Cpe-Chr12:113824 | Cpe13g00199 | Cpe-Chr13:1532186 | 1.36E-73 | dispersed | |
| Cpe12g00023 | Cpe-Chr12:113824 | Cpe17g00317 | Cpe-Chr17:2159794 | 5.76E-134 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe12g00023 | - | - | csv:101220133 | 397.512 |