Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00023 ATGGATAGAATTACACCCCACACTCGCCCTCTTCCACCTCCTTTCCTCTCCAAAGATCTTCATCTCCACCACCGCCAAAACTCCGATGACGACCAAAGCGGCGGAGCTAAAAGGGATAGGGAGGAGGAGAATCCCATCACCGCGGCGGAGACTAAAGAATTATCCAATTCTTCTTCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATCACTAGAGACAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCCGACATCGTGGATACCCTCGCCGCCTTCGCGCGTAGGCGTCAGCGCGGCGTTTGTATTCTAAGCGCCACTGGAACCGTCGCCAACGTCACTCTCCGACAGCCAGCCTCCCCCGCCGCTGTCATCTCCTTACATGGCAGATTTGAAATTCTCTCCCTATCCGGCTCCTTCCTCCCGCCGCCAGCTCCCCCTGCCGCCTCCGGGCTGACCGTCTACTTAGCCGGTGGGCAGGGGCAGGTCGTCGGCGGGAATGTAATCGGCCCACTTTTGGCGTCCGGTCCGGTGATTATTATGGCAGCTTCATTTGGAAATGCTGCATATGAACGGCTACCCATTGACGAGGAAGACGAAACTTCACCGGCGGCGGAGATGGCGGGAGAACAGGCAGCACCGCCGCCGCCGCCGCCGCCGCAATTGTTGGGGGATCCGAATGGGGGATTGTTTCATGGTGTGAATTCTTCATGCCAATTAGCGGCGGAGGCGGCGTATTGGGGAGGAGGTCGGCCACCGTTTTGA 807 58.12 MDRITPHTRPLPPPFLSKDLHLHHRQNSDDDQSGGAKRDREEENPITAAETKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDTLAAFARRRQRGVCILSATGTVANVTLRQPASPAAVISLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLLASGPVIIMAASFGNAAYERLPIDEEDETSPAAEMAGEQAAPPPPPPPQLLGDPNGGLFHGVNSSCQLAAEAAYWGGGRPPF 268
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 113824 114630 - Cp4.1LG12g00240.1 Cpe12g00023 478020
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00023 268 MobiDBLite consensus disorder prediction 213 244 - -
Cpe12g00023 268 Gene3D - 87 216 - -
Cpe12g00023 268 MobiDBLite consensus disorder prediction 1 78 - -
Cpe12g00023 268 CDD DUF296 88 199 IPR005175 -
Cpe12g00023 268 MobiDBLite consensus disorder prediction 224 238 - -
Cpe12g00023 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 268 IPR014476 GO:0003680
Cpe12g00023 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 268 - -
Cpe12g00023 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 213 - -
Cpe12g00023 268 MobiDBLite consensus disorder prediction 49 64 - -
Cpe12g00023 268 ProSiteProfiles PPC domain profile profile. 84 221 IPR005175 -
Cpe12g00023 268 MobiDBLite consensus disorder prediction 18 48 - -
Cpe12g00023 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 200 IPR005175 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00276 Cpe-Chr5:1542453 Cpe12g00023 Cpe-Chr12:113824 2.30E-92 dispersed
Cpe08g00320 Cpe-Chr8:2023409 Cpe12g00023 Cpe-Chr12:113824 6.95E-66 dispersed
Cpe12g00023 Cpe-Chr12:113824 Cpe13g00199 Cpe-Chr13:1532186 1.36E-73 dispersed
Cpe12g00023 Cpe-Chr12:113824 Cpe17g00317 Cpe-Chr17:2159794 5.76E-134 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00023 - - csv:101220133 397.512