Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe12g00024 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGAGGGTCAGGAACTGCCGGTGGTGGCGGCGGCGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACCGGTGTCCATCTCAGACCTGCCGTCAGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCGCGCTCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCAATGCCTCGTCGCCGCCATCGCTCTCTAAATGA | 705 | 59.57 | MSANPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGPPCSNASSPPSLSK | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 118526 | 119798 | - | Cp4.1LG12g00260.1 | Cpe12g00024 | 478021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe12g00024 | 234 | ProSiteProfiles | LOB domain profile. | 27 | 129 | IPR004883 | - | |
Cpe12g00024 | 234 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 220 | - | - | |
Cpe12g00024 | 234 | MobiDBLite | consensus disorder prediction | 181 | 234 | - | - | |
Cpe12g00024 | 234 | MobiDBLite | consensus disorder prediction | 182 | 206 | - | - | |
Cpe12g00024 | 234 | Pfam | Lateral organ boundaries (LOB) domain | 28 | 126 | IPR004883 | - | |
Cpe12g00024 | 234 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 1 | 220 | - | - | |
Cpe12g00024 | 234 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00024 | Cpe-Chr12:118526 | Cpe15g00070 | Cpe-Chr15:502522 | 9.51E-54 | dispersed | |
Cpe12g00024 | Cpe-Chr12:118526 | Cpe12g00025 | Cpe-Chr12:125341 | 1.65E-68 | tandem | |
Cpe12g00024 | Cpe-Chr12:118526 | Cpe17g00315 | Cpe-Chr17:2137602 | 1.21E-105 | wgd | |
Cpe12g00024 | Cpe-Chr12:118526 | Cpe03g01684 | Cpe-Chr3:12825261 | 4.51E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50285 | PF03195 | LOB | 3.30E-37 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe12g00024 | K21994 | - | csv:101220603 | 360.918 |