Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00024 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGAGGGTCAGGAACTGCCGGTGGTGGCGGCGGCGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACCGGTGTCCATCTCAGACCTGCCGTCAGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCGCGCTCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCAATGCCTCGTCGCCGCCATCGCTCTCTAAATGA 705 59.57 MSANPSTSGGGGGSGTAGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPPPPNFAAQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARSLLHRHGGPPCSNASSPPSLSK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 118526 119798 - Cp4.1LG12g00260.1 Cpe12g00024 478021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00024 234 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Cpe12g00024 234 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 220 - -
Cpe12g00024 234 MobiDBLite consensus disorder prediction 181 234 - -
Cpe12g00024 234 MobiDBLite consensus disorder prediction 182 206 - -
Cpe12g00024 234 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Cpe12g00024 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 220 - -
Cpe12g00024 234 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00024 Cpe-Chr12:118526 Cpe15g00070 Cpe-Chr15:502522 9.51E-54 dispersed
Cpe12g00024 Cpe-Chr12:118526 Cpe12g00025 Cpe-Chr12:125341 1.65E-68 tandem
Cpe12g00024 Cpe-Chr12:118526 Cpe17g00315 Cpe-Chr17:2137602 1.21E-105 wgd
Cpe12g00024 Cpe-Chr12:118526 Cpe03g01684 Cpe-Chr3:12825261 4.51E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50285 PF03195 LOB 3.30E-37 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00024 K21994 - csv:101220603 360.918