Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe12g00025 ATGAGTAGCGCCGGCGTCCACGGCGGAGGACCCTGCGGCGCGTGCAAGTTCTTGAGGAGAAAGTGTGTGAAAGGGTGCATATTTGCACCCTATTTCGACTCGGAACAAGGCGCCGCCCACTTCGCGGCGGTGCACAAGGTGTTTGGAGCTAGCAATGCGTCCAAACTCCTCCTACGCATCCCGGCAAACAAGCGGCTGGACGCGTGTGTTACCCTTTGTTATGAAGCTCTGGCTAGGGTTCGAGATCCTGTGTATGGCTGTGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAGCCTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTTCTACATTGCAGCGGCTACTACCGCCACCGCTACACAGCCCGTCCTCGACTGCTCGCCACAATCCGCTCCTGGAAACCACCCTGGGCTCCGATATGGGTCTGCTGCCTAATGTTCCAATGCTCCTCGACCCGCTCCAAACGCAGCTAGGTTGTAATGAAACGACGAGTAGCTTTCTGAACCCAATTGATCATGAAGATGAGATGGATGAAGATGGTGAGCTTCAATCTCTGGCTCGAGAGTTCGTTTCGAGGTATTTTCCCGGAGTAGGATTCCGGCCGCCGTGCTCTCAGATTTGA 633 54.82 MSSAGVHGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLLRIPANKRLDACVTLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAELAYIQAKLSTLQRLLPPPLHSPSSTARHNPLLETTLGSDMGLLPNVPMLLDPLQTQLGCNETTSSFLNPIDHEDEMDEDGELQSLAREFVSRYFPGVGFRPPCSQI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 125341 127664 + Cp4.1LG12g00200.1 Cpe12g00025 478022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe12g00025 210 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Cpe12g00025 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 5 199 - -
Cpe12g00025 210 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Cpe12g00025 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00025 Cpe-Chr12:125341 Cpe17g00315 Cpe-Chr17:2137602 5.39E-60 dispersed
Cpe12g00024 Cpe-Chr12:118526 Cpe12g00025 Cpe-Chr12:125341 1.65E-68 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50286 PF03195 LOB 5.30E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe12g00025 - - csv:101220840 347.051